Gene omics information

Query gene ID	1608533_at
Gene name	hypothetical protein LOC100242285
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.94	99.3	1608533_at	CF212662	hypothetical protein LOC100242285	-	2e-18	At1g73640	AtRABA6a (Arabidopsis Rab GTPase homolog A6a)	S.X.	H.G.	Please select
0.30	39.4	1616258_at	CF207751	hypothetical protein LOC100253120	-	2e-6	At2g44660	transferase, transferring glycosyl groups / transferase, transferring hexosyl groups	S.X.	H.G.	Please select
0.25	30.5	1609764_at	CB978631	-	-	3e-14	At3g48710	-	S.X.	H.G.	Please select
0.23	27.5	1610250_at	CB344696	hypothetical protein LOC100242439	-	7e+0	At5g24790	unknown protein	S.X.	H.G.	Please select
0.22	25.6	1618093_a_at	CF405418	hypothetical protein LOC100252982	-	4e+0	Atmg00130	-	S.X.	H.G.	Please select
0.21	24.0	1616818_s_at	BQ800067	hypothetical protein LOC100245710	-	3e+0	At2g33006	unknown protein	S.X.	H.G.	Please select
0.20	22.4	1620782_at	CB973165	-	-	9e-27	At1g77460	binding	S.X.	H.G.	Please select
0.19	20.9	1606594_at	CB970566	hypothetical protein LOC100250099	-	5e+0	At5g23760	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select
0.19	20.9	1613377_at	CB910700	hypothetical protein LOC100243326	-	4e+0	At3g09350	armadillo/beta-catenin repeat family protein	S.X.	H.G.	Please select
0.19	20.9	1621391_at	CD801716	hypothetical protein LOC100251148	-	4e+0	At5g47980	transferase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.3	98.8	GSM436383	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
6.2	98.8	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
6.0	98.7	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.3	98.2	GSM436384	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM436382	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.0	96.7	GSM436361	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM436387	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM436365	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	1e-10	65	1618348_at	CF373264	hypothetical protein LOC100265921	-	1e-47	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	C.G.	S.X.	Please select
0.04	8e-9	59	1621911_at	CF214080	hypothetical protein LOC100252396	-	3e-64	At3g15060	AtRABA1g (Arabidopsis Rab GTPase homolog A1g)	C.G.	S.X.	Please select
0.04	8e-9	59	1615972_at	CF215988	hypothetical protein LOC100249712	-	9e-33	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	C.G.	S.X.	Please select
0.04	3e-8	57	1609466_at	CD797661	hypothetical protein LOC100262838	-	3e-61	At5g65270	AtRABA4a (Arabidopsis Rab GTPase homolog A4a)	C.G.	S.X.	Please select
0.03	5e-4	44	1619728_at	BM437855	-	-	1e-35	At3g12160	RABA4D (RAB GTPASE HOMOLOG A4D)	C.G.	S.X.	Please select
0.03	5e-4	44	1607044_at	BM437855	hypothetical protein LOC100246065	-	1e-35	At3g12160	RABA4D (RAB GTPASE HOMOLOG A4D)	C.G.	S.X.	Please select
0.03	5e-4	44	1606813_s_at	CF211962	hypothetical protein LOC100245986	-	9e-77	At5g47200	ATRAB1A	C.G.	S.X.	Please select
0.04	7e-3	40	1617354_at	CA816074	hypothetical protein LOC100263639	-	6e-121	At3g46060	ATRAB8A	C.G.	S.X.	Please select
0.04	7e-3	40	1610105_at	CF206332.1	-	-	2e-77	At1g52280	AtRABG3d (Arabidopsis Rab GTPase homolog G3d)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	2e-18	93	Arabidopsis thaliana	At1g73640	843698	AtRABA6a (Arabidopsis Rab GTPase homolog A6a)	F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.25	7e-19	95	Glycine max	GmaAffx.48323.2.S1_at	AW278358	-	-	3e-3	At1g07410	ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B)	C.G.	S.X.	Please select
0.04	5e-5	48	Hordeum vulgare	Contig4706_at	Contig4706	-	-	2e-93	At4g17170	RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)	C.G.	S.X.	Please select
0.05	2e-1	38	Oryza sativa	OsAffx.27955.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.33	7e-28	125	Populus trichocarpa	PtpAffx.95018.1.A1_s_at	CV263305	hypothetical protein	-	1e-14	At1g18200	AtRABA6b (Arabidopsis Rab GTPase homolog A6b)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	1e-4	48	Triticum aestivum	Ta.5309.3.S1_at	CA635757	-	-	2e-30	At4g17170	RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)	C.G.	S.X.	Please select
0.05	7e-10	63	Zea mays	Zm.5901.1.A1_at	BG841111	hypothetical protein LOC100191848	-	4e-39	At5g47200	ATRAB1A	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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