Gene omics information

Query gene ID	1608469_at
Gene name	hypothetical protein LOC100246886
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	80.6	1608469_at	CF519012	hypothetical protein LOC100246886	-	4e+0	At4g23910	unknown protein	S.X.	H.G.	Please select
0.50	72.7	1617229_s_at	CB975402	-	-	2e-1	At2g22520	unknown protein	S.X.	H.G.	Please select
0.27	34.0	1620810_at	CF214559	-	-	2e+0	At4g09770	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	S.X.	H.G.	Please select
0.18	19.4	1606685_at	CB348042	-	-	5e-1	At2g15770	glycine-rich protein	S.X.	H.G.	Please select
0.14	14.4	1607592_at	CA808967	-	-	5e-1	At3g27630	unknown protein	S.X.	H.G.	Please select
0.07	7.8	1610383_at	CF203837.1	-	-	5e-19	At3g11410	PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.2	99.1	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
4.3	97.2	GSM147731	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	60
4.0	96.7	GSM147712	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	41
4.0	96.7	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
3.8	96.4	GSM147719	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	48
3.6	96.0	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.9	93.8	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-5	48	1614805_at	CF207170	-	-	1e+0	At1g48730	unknown protein	C.G.	S.X.	Please select
0.04	1e-3	42	1621269_at	CB003298	-	-	1e+0	At1g43666	lipid transfer protein-related	C.G.	S.X.	Please select
0.04	1e-3	42	1608662_at	CB003298	-	-	1e+0	At1g43666	lipid transfer protein-related	C.G.	S.X.	Please select
0.06	1e-3	42	1608005_at	CF204974.1	-	-	1e+0	At1g48730	unknown protein	C.G.	S.X.	Please select
0.06	7e-2	36	1621851_at	BQ800610	-	-	1e+0	At5g63370	protein kinase family protein	C.G.	S.X.	Please select
0.05	7e-2	36	1618712_at	CB003306	-	-	3e-1	At4g21330	DYT1 (DYSFUNCTIONAL TAPETUM 1)	C.G.	S.X.	Please select
0.03	7e-2	36	1617176_at	CD719173	-	-	5e+0	At5g38080	unknown protein	C.G.	S.X.	Please select
0.05	7e-2	36	1616718_at	CF207539	-	-	4e+0	At5g44420	PDF1.2	C.G.	S.X.	Please select
0.05	7e-2	36	1614914_at	CB003306	-	-	3e-1	At4g21330	DYT1 (DYSFUNCTIONAL TAPETUM 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At4g23910	828491	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.43127.1.A1_at	CD394843	-	-	3e+1	At5g62576	unknown protein	C.G.	S.X.	Please select
0.03	8e+0	30	Hordeum vulgare	HVSMEf0015M13r2_s_at	HVSMEf0015M13r2	-	-	4e+0	At3g23350	-	C.G.	S.X.	Please select
0.02	2e+0	34	Oryza sativa	Os10g0105800	9638.m00069	-	Transferase family protein	8e+0	At5g25400	phosphate translocator-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.200174.1.S1_at	pmrna326	hypothetical protein	-	3e-1	At3g52550	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	TaAffx.108671.1.S1_at	CA685545	-	-	3e-1	At4g08895	inorganic phosphate transporter family protein	C.G.	S.X.	Please select
0.02	4e-1	34	Zea mays	Zm.646.2.A1_a_at	AF129859.1	CENPCA protein	-	7e-1	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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