Gene omics information

Query gene ID	1608449_at
Gene name	hypothetical protein LOC100247109
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	80.6	1608449_at	CB349956	hypothetical protein LOC100247109	-	6e-72	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	S.X.	H.G.	Please select
0.57	79.8	1608703_at	CF510814	ubiquitin-activating enzyme	-	1e-24	At5g06460	ATUBA2	S.X.	H.G.	Please select
0.55	77.3	1615735_at	CD797265	hypothetical protein LOC100259271	-	0	At1g50370	serine/threonine protein phosphatase, putative	S.X.	H.G.	Please select
0.49	69.3	1622378_s_at	CB974439	hypothetical protein LOC100252146	-	5e-10	At5g54855	pollen Ole e 1 allergen and extensin family protein	S.X.	H.G.	Please select
0.47	67.7	1616861_s_at	BQ792575	hypothetical protein LOC100244246	-	9e-11	At4g17720	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.44	64.1	1620906_s_at	CB972641	hypothetical protein LOC100246670	-	2e+0	At1g32630	unknown protein	S.X.	H.G.	Please select
0.41	58.7	1616941_at	CD713937	hypothetical protein LOC100248410	-	2e-39	At1g07830	ribosomal protein L29 family protein	S.X.	H.G.	Please select
0.39	54.9	1607275_at	CF210833	hypothetical protein LOC100261812	-	7e-13	At3g15980	coatomer protein complex, subunit beta 2 (beta prime), putative	S.X.	H.G.	Please select
0.35	48.5	1614840_at	CF415070	hypothetical protein LOC100248036	-	2e-56	At1g10840	TIF3H1	S.X.	H.G.	Please select
0.33	45.7	1612039_at	BQ799884	hypothetical protein LOC100266651	-	1e-18	At2g03870	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.6	96.0	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-1	34	1620288_s_at	CB982227	hypothetical protein LOC100243939	-	8e-18	At1g65970	TPX2 (thioredoxin-dependent peroxidase 2)	C.G.	S.X.	Please select
0.02	3e+0	32	1621160_at	CF208890	-	-	2e-1	At5g24250	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	1619341_at	BQ800462	hypothetical protein LOC100242615	-	1e-13	At3g16560	protein phosphatase 2C-related / PP2C-related	C.G.	S.X.	Please select
0.01	3e+0	32	1616495_at	CF517304	glutathione S-transferase 5	-	1e-1	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	C.G.	S.X.	Please select
0.02	3e+0	32	1615908_at	CF214075	hypothetical protein LOC100249757	-	9e-88	At3g02530	chaperonin, putative	C.G.	S.X.	Please select
0.02	3e+0	32	1615524_at	CA810708	MADS-box protein	-	7e-5	At2g45660	AGL20 (AGAMOUS-LIKE 20)	C.G.	S.X.	Please select
0.01	3e+0	32	1615322_at	CB342395	hypothetical protein LOC100250934	-	3e-5	At5g19940	plastid-lipid associated protein PAP-related / fibrillin-related	C.G.	S.X.	Please select
0.01	3e+0	32	1613832_at	CA809303	hypothetical protein LOC100243698	-	5e-4	At2g23290	AtMYB70 (myb domain protein 70)	C.G.	S.X.	Please select
0.02	3e+0	32	1609325_at	CB001903	hypothetical protein LOC100267099	-	2e-14	At2g27680	aldo/keto reductase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	6e-72	272	Arabidopsis thaliana	At1g19580	838545	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.51	2e-119	430	Glycine max	Gma.16388.1.S1_at	CD403252	-	-	1e-42	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.22	3e-60	232	Hordeum vulgare	Contig3102_at	Contig3102	-	-	2e-13	At5g66510	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	C.G.	S.X.	Please select
0.32	1e-31	139	Oryza sativa	Os01g0283100	AK071713.1	-	Ferripyochelin-binding protein-like	1e-35	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.60	0	724	Populus trichocarpa	Ptp.2146.1.S1_at	CK088192	hypothetical protein	-	5e-109	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.33	2e-41	171	Triticum aestivum	Ta.3097.1.S1_at	CD937885	-	-	2e-7	At5g66510	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	C.G.	S.X.	Please select
0.46	6e-64	244	Zea mays	Zm.15626.1.S1_at	CA404507	-	-	1e-8	At5g66510	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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