CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1608440_at

Gene name hypothetical protein LOC100252552

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 94.6 1608440_at CF207598 hypothetical protein LOC100252552 - 8e-43 At1g68020 ATTPS6 S.X. H.G.
0.60 81.9 1622287_at CB982913 hypothetical protein LOC100245285 - 1e+0 At3g17160 unknown protein S.X. H.G.
0.60 81.9 1610007_at CA809320 hypothetical protein LOC100254064 - 2e+0 At3g53020 STV1 (SHORT VALVE1) S.X. H.G.
0.53 75.2 1616076_s_at CF972320.1 hypothetical protein LOC100263773 - 7e-1 At2g17130 IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2) S.X. H.G.
0.40 57.7 1607931_s_at CF205253.1 hypothetical protein LOC100254064 - 2e+0 At2g25950 unknown protein S.X. H.G.
0.14 14.4 1617037_at CF511184 hypothetical protein LOC100264477 - 5e+0 At5g65390 AGP7 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.6 98.9 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
6.3 98.8 GSM436367 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
5.2 98.2 GSM436406 V. riparia (VR, PI588259) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.9 97.9 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.7 97.7 GSM436387 Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.5 97.5 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.5 97.5 GSM436428 V. riparia (VR, PI588259) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.0 96.7 GSM436350 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.8 96.4 GSM436407 V. riparia (VR, PI588259) LD, 15h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.7 96.2 GSM436429 V. riparia (VR, PI588259) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 6e-1 34 1621380_at CF513977 - - 0 Atcg00680 - C.G. S.X.
0.01 6e-1 34 1617605_at CF513977 - - 0 Atcg00680 - C.G. S.X.
0.03 6e-1 34 1613539_at CF517419 hypothetical protein LOC100247624 - 1e-9 At5g03940 CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) C.G. S.X.
0.02 2e+0 32 1620266_at CB977258 hypothetical protein LOC100267825 - 5e-3 At3g13340 WD-40 repeat family protein C.G. S.X.
0.01 2e+0 32 1611557_s_at CF214257 hypothetical protein LOC100267006 - 1e-38 At1g13950 ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) C.G. S.X.
0.01 2e+0 32 1609647_at CF214257 hypothetical protein LOC100267006 - 1e-38 At1g13950 ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) C.G. S.X.
0.03 2e+0 32 1607707_at CB341307 hypothetical protein LOC100260840 - 4e+0 At5g05380 PRA1.B3 (PRENYLATED RAB ACCEPTOR 1.B3) C.G. S.X.
0.02 9e+0 30 1622475_at CF403716 hypothetical protein LOC100242137 - 8e-1 At3g18460 unknown protein C.G. S.X.
0.01 9e+0 30 1620149_at CB972811 hypothetical protein LOC100265385 - 2e-9 At3g61580 delta-8 sphingolipid desaturase (SLD1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 8e-43 174 Arabidopsis thaliana At1g68020 843130 ATTPS6 Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain and a trehalose phosphatase (TPP)-like domain. It can complement a yeast mutant lacking both of these activities suggesting that this is a bifunctional enzyme. - - - C.G. S.X.
0.32 2e-59 230 Glycine max GmaAffx.12926.1.A1_at BQ298426 - - 1e-38 At1g68020 ATTPS6 C.G. S.X.
0.04 1e-9 63 Hordeum vulgare Contig4657_at Contig4657 - - 3e-5 At1g23870 ATTPS9 C.G. S.X.
0.08 2e-23 111 Oryza sativa Os09g0397300 AK105382.1 - Glycosyl transferase, family 20 domain containingprotein 7e-28 At1g68020 ATTPS6 C.G. S.X.
0.26 1e-26 121 Populus trichocarpa PtpAffx.14544.1.S1_at CV260978 hypothetical protein - 2e-2 At1g68020 ATTPS6 C.G. S.X.
0.04 2e-3 44 Triticum aestivum Ta.20649.3.S1_x_at CA637788 - - 7e-8 At1g68020 ATTPS6 C.G. S.X.
0.06 9e-7 54 Zea mays Zm.3961.1.S1_at CK370362 hypothetical protein LOC100272531 - 3e-7 At1g70290 ATTPS8 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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