CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1608425_at

Gene name hypothetical protein LOC100267018

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 94.6 1608425_at CB910322 hypothetical protein LOC100267018 - 1e-1 At5g67510 60S ribosomal protein L26 (RPL26B) S.X. H.G.
0.80 93.6 1622756_at CF414976 similar to 60S ribosomal protein L34 - 5e-31 At1g69620 RPL34 (RIBOSOMAL PROTEIN L34) S.X. H.G.
0.50 72.7 1617136_s_at CF214297 hypothetical protein LOC100246159 - 2e-58 At4g16720 60S ribosomal protein L15 (RPL15A) S.X. H.G.
0.46 66.5 1617806_at BQ797048 hypothetical protein LOC100249540 - 4e-10 At2g39990 EIF2 S.X. H.G.
0.40 57.7 1618864_at BQ800592 similar to ribosomal protein L10a - 5e-56 At1g08360 60S ribosomal protein L10A (RPL10aA) S.X. H.G.
0.25 30.5 1615194_at CF373310 hypothetical protein LOC100256025 - 3e-29 At1g77940 60S ribosomal protein L30 (RPL30B) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.4 91.3 GSM436363 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436368 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436373 Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436369 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436382 Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436377 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436396 V. riparia (VR, PI588259) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436352 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 1e-32 139 1621330_at CF372287 hypothetical protein LOC100242242 - 4e-4 At5g67510 60S ribosomal protein L26 (RPL26B) C.G. S.X.
0.03 2e+0 32 1620411_at CB343828 hypothetical protein LOC100248931 - 2e-1 At2g14890 AGP9 (ARABINOGALACTAN PROTEIN 9) C.G. S.X.
0.02 2e+0 32 1618183_at CB342495 - - 9e-2 At5g16490 RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4) C.G. S.X.
0.02 2e+0 32 1607887_at CF215963 hypothetical protein LOC100241008 - 2e+0 At5g50880 unknown protein C.G. S.X.
0.03 7e+0 30 1622769_at BQ793816 hypothetical protein LOC100243302 - 1e-22 At1g55520 TBP2 (TATA BINDING PROTEIN 2) C.G. S.X.
0.02 7e+0 30 1621584_at CF203397.1 - - 2e+0 At2g33870 ArRABA1h (Arabidopsis Rab GTPase homolog A1h) C.G. S.X.
0.02 7e+0 30 1618169_at CB001607 - - 6e+0 At3g09975 unknown protein C.G. S.X.
0.02 7e+0 30 1615118_at CF373171 hypothetical protein LOC100241584 - 1e+0 At4g36620 zinc finger (GATA type) family protein C.G. S.X.
0.02 7e+0 30 1614817_at CB970028 hypothetical protein LOC100267905 - 2e-12 At4g33060 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 1e-1 38 Arabidopsis thaliana At5g67510 836887 60S ribosomal protein L26 (RPL26B) F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit;MAOFPB - - - C.G. S.X.
0.31 5e-41 169 Glycine max Gma.11173.2.S1_at CD397537 - - 3e-8 At3g49910 60S ribosomal protein L26 (RPL26A) C.G. S.X.
0.31 2e-38 159 Hordeum vulgare Contig722_at Contig722 - - 3e-8 At3g49910 60S ribosomal protein L26 (RPL26A) C.G. S.X.
0.44 6e-51 202 Oryza sativa Os.9317.2.S1_at - - - 0 C.G. S.X.
0.20 2e-19 97 Populus trichocarpa Ptp.798.1.A1_x_at CV252898 - - 1e-28 At3g49910 60S ribosomal protein L26 (RPL26A) C.G. S.X.
0.29 7e-46 184 Triticum aestivum Ta.39.4.S1_x_at BJ294771 - - 1e-2 At3g49910 60S ribosomal protein L26 (RPL26A) C.G. S.X.
0.37 6e-26 117 Zea mays Zm.6748.2.A1_at AY103965.1 60S ribosomal protein L26-1 - 5e-10 At3g49910 60S ribosomal protein L26 (RPL26A) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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