CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1608305_at

Gene name hypothetical protein LOC100258034

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.74 91.0 1608305_at CF415367 hypothetical protein LOC100258034 - 5e-3 At3g23090 - S.X. H.G.
0.36 50.7 1614663_at CD800310 hypothetical protein LOC100252340 - 2e-5 At1g11680 CYP51G1 (CYTOCHROME P450 51G1) S.X. H.G.
0.35 48.5 1619172_at CD799360 hypothetical protein LOC100264449 - 1e-85 At1g50380 prolyl oligopeptidase family protein S.X. H.G.
0.30 39.4 1620282_at CB977969 hypothetical protein LOC100243325 - 5e+0 At5g13440 ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative S.X. H.G.
0.26 32.0 1618858_at CB972840 hypothetical LOC100253454 - 5e+0 At5g48543 LCR1 (Low-molecular-weight cysteine-rich 1) S.X. H.G.
0.15 15.6 1615727_at CF205417.1 hypothetical protein LOC100261981 - 9e-2 At4g31470 pathogenesis-related protein, putative S.X. H.G.
0.09 9.4 1617299_at CD801559 hypothetical protein LOC100249941 - 3e-31 At2g46225 ABIL1 (Abi-1-like 1) S.X. H.G.
0.08 8.5 1614958_at CB347627 hypothetical protein LOC100241674 - 2e-6 At5g13050 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.1 98.7 GSM287866 Green hard berry B21 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
4.3 97.2 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
4.0 96.7 GSM287867 Green hard berry C1 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.9 96.6 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
3.3 95.2 GSM147742 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 71
3.1 94.6 GSM147725 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 54
2.7 93.0 GSM436390 V. riparia (VR, PI588259) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM147718 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 47
2.5 91.9 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.4 91.3 GSM147724 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 53
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 9e-2 36 1619496_at CF372656 hypothetical LOC100265165 - 1e-1 At4g17950 DNA-binding family protein C.G. S.X.
0.03 9e-2 36 1611271_at CF208856 similar to CHR4/MI-2-LIKE (chromatin remodeling 4); ATP binding / DNA binding / chromatin binding / helicase - 4e+0 At5g62780 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.02 9e-2 36 1610919_at CA816890 hypothetical protein LOC100250818 - 2e-121 At5g20020 RAN2 C.G. S.X.
0.02 4e-1 34 1614766_at BQ799111 hypothetical protein LOC100244101 - 5e-29 At4g32330 - C.G. S.X.
0.02 1e+0 32 1619815_at CB973946 hypothetical protein LOC100267277 - 4e-7 At5g58375 unknown protein C.G. S.X.
0.02 1e+0 32 1619655_at CF604767 hypothetical protein LOC100252634 - 4e-1 At3g09480 histone H2B, putative C.G. S.X.
0.02 1e+0 32 1619012_s_at CB347420 hypothetical protein LOC100258081 /// thioredoxin h - 4e-2 At1g11530 ATCXXS1 (C-terminal cysteine residue is changed to a serine 1) C.G. S.X.
0.03 1e+0 32 1618662_at CF215146 - - 4e+0 At4g10860 unknown protein C.G. S.X.
0.02 1e+0 32 1617569_s_at CA812186 hypothetical protein LOC100246017 - 3e-14 At5g27700 structural constituent of ribosome C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 5e-3 42 Arabidopsis thaliana At3g23090 821884 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBA - - - C.G. S.X.
0.04 1e-4 48 Glycine max Gma.17382.1.S1_at BG882742 - - 2e-1 At1g54460 - C.G. S.X.
0.04 4e-2 38 Hordeum vulgare Contig11716_at Contig11716 - - 6e-14 At2g25480 - C.G. S.X.
0.06 7e-10 65 Oryza sativa Os03g0799100 AK102772.1 - BRI1-KD interacting protein 116 (Fragment) 1e-2 At3g23090 - C.G. S.X.
0.14 2e-31 137 Populus trichocarpa Ptp.2611.2.A1_a_at CV273906 hypothetical protein - 2e-12 At3g23090 - C.G. S.X.
0.04 2e-2 40 Triticum aestivum Ta.23767.1.S1_a_at BJ310599 - - 1e-2 At4g32330 - C.G. S.X.
0.06 3e-15 81 Zea mays Zm.4569.1.S1_at CO528621 seed specific protein Bn15D14A - 3e-6 At3g23090 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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