Gene omics information

Query gene ID	1608277_at
Gene name	hypothetical protein LOC100249980
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1608277_at	CA816391	hypothetical protein LOC100249980	-	3e-75	At4g12230	esterase/lipase/thioesterase family protein	S.X.	H.G.	Please select
0.67	87.9	1606778_at	CF607072	hypothetical protein LOC100261953	-	6e-30	At3g56740	ubiquitin-associated (UBA)/TS-N domain-containing protein	S.X.	H.G.	Please select
0.61	83.2	1622567_at	CF516028	hypothetical protein LOC100266603	-	2e-20	At5g27490	integral membrane Yip1 family protein	S.X.	H.G.	Please select
0.46	66.5	1622000_s_at	CF604800	hypothetical protein LOC100242169	-	1e+0	At3g27329	-	S.X.	H.G.	Please select
0.40	57.7	1608708_at	CF211873	hypothetical protein LOC100255983	-	2e-9	At4g29680	type I phosphodiesterase/nucleotide pyrophosphatase family protein	S.X.	H.G.	Please select
0.10	10.3	1618091_s_at	CB973873	hypothetical protein LOC100255026	-	6e-3	At3g17020	universal stress protein (USP) family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.6	96.0	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-10	63	1621610_at	CF372731	-	-	8e-6	At4g28240	wound-responsive protein-related	C.G.	S.X.	Please select
0.05	4e-10	63	1618494_at	CF405291	hypothetical protein LOC100264126	-	7e-5	At1g18010	-	C.G.	S.X.	Please select
0.04	4e-10	63	1606701_s_at	CF514905	hypothetical protein LOC100260907	-	2e-28	At5g23750	remorin family protein	C.G.	S.X.	Please select
0.03	2e-9	61	1622195_at	CB969266	hypothetical protein LOC100248937	-	3e-15	At4g07990	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.04	2e-9	61	1621663_at	CF211908	-	-	5e-1	At4g04650	-	C.G.	S.X.	Please select
0.05	2e-9	61	1614558_at	CF214381	hypothetical protein LOC100252287	-	1e-3	At1g09750	chloroplast nucleoid DNA-binding protein-related	C.G.	S.X.	Please select
0.05	2e-9	61	1609218_at	BM437324	-	-	3e-1	At4g40030	histone H3.2	C.G.	S.X.	Please select
0.04	2e-9	61	1606513_s_at	CB981864	similar to Stress-related protein	-	2e+0	At2g47780	rubber elongation factor (REF) protein-related	C.G.	S.X.	Please select
0.04	7e-9	59	1614437_at	CF406008	-	-	5e-1	At3g25882	NIMIN-2 (NIM1-INTERACTING 2)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	3e-75	282	Arabidopsis thaliana	At4g12230	826831	esterase/lipase/thioesterase family protein	F:catalytic activity;P:biological_process unknown;C:cellular_component unknown;BOMPAFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.52	6e-62	238	Glycine max	GmaAffx.73159.1.S1_at	BG790499	-	-	1e-30	At4g12230	esterase/lipase/thioesterase family protein	C.G.	S.X.	Please select
0.14	2e-22	105	Hordeum vulgare	Contig6023_s_at	Contig6023	-	-	3e-12	At4g12230	esterase/lipase/thioesterase family protein	C.G.	S.X.	Please select
0.07	4e-11	69	Oryza sativa	Os10g0169800	AK067281.1	-	Alpha/beta hydrolase fold domain containingprotein	7e-32	At4g12230	esterase/lipase/thioesterase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.66	1e-112	406	Populus trichocarpa	PtpAffx.132474.1.S1_at	BP927927	hypothetical protein	-	2e-101	At4g12230	esterase/lipase/thioesterase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	3e-7	56	Triticum aestivum	Ta.16933.1.S1_at	CA615409	-	-	5e+0	At3g44940	unknown protein	C.G.	S.X.	Please select
0.02	8e+0	30	Zea mays	Zm.8786.1.A1_at	BM267294	-	-	2e+1	At5g11070	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage