CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1608262_at

Gene name class I extracellular chitinase

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 92.3 1608262_at AF053341.1 class I extracellular chitinase - 2e+0 At3g04180 germin-like protein, putative S.X. H.G.
0.83 94.6 1622291_at CF518951 hypothetical protein LOC100266558 - 2e-1 At2g31670 - S.X. H.G.
0.67 87.9 1607408_at CF216013 - - 2e-1 At1g10720 BSD domain-containing protein S.X. H.G.
0.63 84.3 1618373_at Z68123.1 acidic chitinase - 2e-13 At5g24090 acidic endochitinase (CHIB1) S.X. H.G.
0.60 81.9 1609131_at CF514932 hypothetical protein LOC100250973 - 4e-7 At1g21245 wall-associated kinase-related S.X. H.G.
0.18 19.4 1613108_at CF204709.1 hypothetical protein LOC100245787 - 4e-1 At1g70450 protein kinase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
42.9 100.0 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
31.2 100.0 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
12.9 99.8 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
12.1 99.8 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
10.2 99.6 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
8.4 99.4 GSM147734 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 63
8.2 99.4 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
7.8 99.3 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
7.7 99.3 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
5.4 98.3 GSM147729 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 58
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 5e-20 97 1620505_at Z54234.1 chitinase class I - 2e-3 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.35 5e-20 97 1617430_s_at Z54234.1 chitinase class I - 2e-3 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.04 7e-7 54 1607647_at CF205104.1 - - 1e-1 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.02 4e-2 38 1620592_at CF515947 - - 1e+0 At5g41450 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 7e-1 34 1621257_at CB834235 - - 5e+0 At5g42380 CML37 (CALMODULIN LIKE 37) C.G. S.X.
0.02 7e-1 34 1616164_at CB972702 - - 9e-1 At4g01230 reticulon family protein (RTNLB7) C.G. S.X.
0.02 7e-1 34 1608651_at CB834235 - - 5e+0 At5g42380 CML37 (CALMODULIN LIKE 37) C.G. S.X.
0.01 3e+0 32 1619209_at CA817415 - - 2e+0 At1g76680 OPR1 C.G. S.X.
0.02 3e+0 32 1617192_at AY137377.1 class IV chitinase - 4e-2 At2g43570 chitinase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At3g04180 819573 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOBA - - - C.G. S.X.
0.10 6e-14 79 Glycine max Gma.2833.1.S1_s_at AF202731.1 chitinase class I - 9e-3 At4g01700 chitinase, putative C.G. S.X.
0.06 3e-7 56 Hordeum vulgare Contig7001_at Contig7001 - - 2e-1 At1g02360 chitinase, putative C.G. S.X.
0.08 8e-5 50 Oryza sativa Os06g0726200 AK061042.1 - Endochitinase precursor (EC 3.2.1.14) 2e-4 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.14 1e-5 52 Populus trichocarpa PtpAffx.77318.1.S1_x_at CX658423 hypothetical protein - 4e-2 At2g43570 chitinase, putative C.G. S.X.
0.07 6e-1 36 Triticum aestivum Ta.5873.1.S1_x_at CD910379 - - 5e-1 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.06 2e-2 40 Zea mays Zm.201.1.S1_at L16798.1 class I acidic chitinase - 8e-3 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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