Gene omics information

Query gene ID	1608259_at
Gene name	hypothetical protein LOC100255358
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1608259_at	CF205412.1	hypothetical protein LOC100255358	-	2e-6	At5g59520	ZIP2	S.X.	H.G.	Please select
0.67	87.9	1610914_at	CF203251.1	-	-	3e+0	At4g04745	unknown protein	S.X.	H.G.	Please select
0.60	81.9	1616654_x_at	CF202840.1	-	-	2e+1	At4g01430	nodulin MtN21 family protein	S.X.	H.G.	Please select
0.60	81.9	1618607_s_at	CB972339	hypothetical protein LOC100255358	-	1e-3	At1g55910	ZIP11 (ZINC TRANSPORTER 11 PRECURSOR)	S.X.	H.G.	Please select
0.55	77.3	1620683_at	CA811381	hypothetical protein LOC100245630	-	8e-9	At4g26160	ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1)	S.X.	H.G.	Please select
0.33	45.7	1619820_s_at	CA811381	hypothetical protein LOC100245630	-	8e-9	At4g26160	ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.1	99.4	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
6.5	98.9	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
6.2	98.8	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
5.9	98.6	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
5.4	98.3	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
5.3	98.2	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
5.3	98.2	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
4.8	97.8	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
4.7	97.7	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
4.6	97.6	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.65	0	747	1618607_s_at	CB972339	hypothetical protein LOC100255358	-	1e-3	At1g55910	ZIP11 (ZINC TRANSPORTER 11 PRECURSOR)	C.G.	S.X.	Please select
0.03	5e-10	63	1613993_at	CB342665	hypothetical protein LOC100253257	-	2e-7	At1g55910	ZIP11 (ZINC TRANSPORTER 11 PRECURSOR)	C.G.	S.X.	Please select
0.02	2e+0	32	1621765_at	CD004023	-	-	3e-49	At4g05020	NDB2 (NAD(P)H dehydrogenase B2)	C.G.	S.X.	Please select
0.03	2e+0	32	1613684_at	CF403907	hypothetical protein LOC100266194	-	1e+0	At1g33270	patatin-related	C.G.	S.X.	Please select
0.02	2e+0	32	1613280_at	CF517504	hypothetical protein LOC100262630	-	1e-3	At1g33750	terpene synthase/cyclase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1609220_s_at	CF404726	hypothetical protein LOC100242412	-	3e-52	At4g29160	SNF7.1	C.G.	S.X.	Please select
0.02	2e+0	32	1609151_at	CD004023	hypothetical protein LOC100241384 /// hypothetical protein LOC100264241	-	3e-49	At4g05020	NDB2 (NAD(P)H dehydrogenase B2)	C.G.	S.X.	Please select
0.02	2e+0	32	1606554_at	CB978027	hypothetical protein LOC100247788	-	8e-3	At2g26710	BAS1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1)	C.G.	S.X.	Please select
0.02	7e+0	30	1621780_at	CB977503	-	-	9e-2	At4g24070	carbon-carbon lyase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e-6	54	Arabidopsis thaliana	At5g59520	836071	ZIP2	encodes a metal ion transporter whose expression is regulated by copper.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	4e-5	50	Glycine max	GmaAffx.764.1.S1_at	BE821100	-	-	1e-6	At1g55910	ZIP11 (ZINC TRANSPORTER 11 PRECURSOR)	C.G.	S.X.	Please select
0.02	1e+1	30	Hordeum vulgare	Contig24718_at	Contig24718	-	-	4e+0	At2g19802	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	34	Oryza sativa	OsAffx.3189.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.46	1e-60	234	Populus trichocarpa	PtpAffx.204956.1.S1_at	pmrna9803	ZIP transporter	-	1e-4	At5g59520	ZIP2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	6e+0	32	Triticum aestivum	TaAffx.52211.1.S1_at	CA711169	-	-	5e+0	At5g25540	CID6 (CTC-Interacting Domain 6)	C.G.	S.X.	Please select
0.03	7e-1	34	Zea mays	ZmAffx.88.1.A1_at	AI665347	carnitine racemase/ catalytic	-	3e+0	At5g35375	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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