Gene omics information

Query gene ID	1608231_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1608231_at	CB979713	-	-	1e+0	At4g02620	vacuolar ATPase subunit F family protein	S.X.	H.G.	Please select
0.31	41.3	1608931_at	CD799025	similar to AO (L-ASPARTATE OXIDASE); L-aspartate oxidase	-	1e+1	At5g41390	-	S.X.	H.G.	Please select
0.29	37.7	1619222_at	CF215786	-	-	4e-1	At5g39540	-	S.X.	H.G.	Please select
0.26	32.0	1618763_at	CF609703	hypothetical protein LOC100257331	-	3e-2	At1g75388	CPuORF5 (Conserved peptide upstream open reading frame 5)	S.X.	H.G.	Please select
0.24	28.7	1607634_at	CF204724.1	-	-	2e-9	At5g65660	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.22	25.6	1610613_at	CF405805	hypothetical protein LOC100243271	-	2e-27	At1g03475	LIN2 (LESION INITIATION 2)	S.X.	H.G.	Please select
0.21	24.0	1619201_at	CF404561	Myb-related TRIPTYCHON-like protein	-	4e-28	At5g53200	TRY (TRIPTYCHON)	S.X.	H.G.	Please select
0.20	22.4	1614388_at	CF210132	hypothetical protein LOC100241529	-	2e-1	At2g21610	pectinesterase family protein	S.X.	H.G.	Please select
0.18	19.4	1611842_at	CB969887	hypothetical protein LOC100267889	-	5e-27	At2g25737	unknown protein	S.X.	H.G.	Please select
0.18	19.4	1615486_at	CF415476	hypothetical protein LOC100245706	-	7e-3	At5g15410	DND1 (DEFENSE NO DEATH 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.0	100.0	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
13.7	99.8	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
12.9	99.8	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.2	99.1	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.1	99.1	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.4	98.9	GSM147681	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	10
6.0	98.7	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
4.8	97.8	GSM147732	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	61
4.2	97.1	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
4.1	96.9	GSM147714	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	43

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-1	34	1607694_at	CF405458	-	-	8e+0	At5g55320	membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related	C.G.	S.X.	Please select
0.02	3e-1	34	1607585_at	CF403358	hypothetical protein LOC100267799	-	7e+0	At5g09820	plastid-lipid associated protein PAP / fibrillin family protein	C.G.	S.X.	Please select
0.02	1e+0	32	1621771_at	CB348522	40S ribosomal protein SA	-	1e-110	At1g72370	P40	C.G.	S.X.	Please select
0.03	1e+0	32	1618272_at	CK136958.1	-	-	1e+0	At4g07950	DNA-directed RNA polymerase III family protein	C.G.	S.X.	Please select
0.02	1e+0	32	1614577_at	CF373217	hypothetical protein LOC100265381	-	1e-16	At1g23750	DNA-binding protein-related	C.G.	S.X.	Please select
0.02	1e+0	32	1614332_s_at	CA814568	hypothetical protein LOC100265533	-	4e-4	At2g28710	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.03	1e+0	32	1608821_at	CF373423	hypothetical protein LOC100259588	-	1e+0	At4g23670	major latex protein-related / MLP-related	C.G.	S.X.	Please select
0.03	1e+0	32	1607349_at	CF516800	hypothetical protein LOC100263112	-	6e-2	At4g35530	phosphatidylinositolglycan-related	C.G.	S.X.	Please select
0.03	5e+0	30	1621839_at	CD715518	-	-	5e+0	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At4g02620	828221	vacuolar ATPase subunit F family protein	F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:plasma membrane, vacuole;MFOPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	1e+0	34	Glycine max	GmaAffx.57848.1.A1_at	BU547166	-	-	2e+0	At4g12100	ubiquitin protein ligase binding	C.G.	S.X.	Please select
0.04	8e+0	30	Hordeum vulgare	HVSMEb0006M02r2_s_at	HVSMEb0006M02r2	-	-	6e-1	At3g22930	calmodulin, putative	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	Os10g0150400	CF308064	-	Protein of unknown function DUF1210 family protein	2e+0	At5g14340	AtMYB40 (myb domain protein 40)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	5e+0	32	Populus trichocarpa	PtpAffx.217609.1.S1_s_at	pmrna32945	hypothetical protein	-	1e+0	At3g21730	dihydroneopterin aldolase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	TaAffx.110700.4.A1_at	CA638753	-	-	1e+0	At3g01175	-	C.G.	S.X.	Please select
0.03	1e-1	36	Zea mays	Zm.1454.1.A1_at	BG841866	-	-	4e-1	At3g63170	chalcone isomerase	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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