Gene omics information

Query gene ID	1608178_s_at
Gene name	hypothetical protein LOC100242383
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1608178_s_at	CF210114	hypothetical protein LOC100242383	-	5e-19	At3g43230	zinc finger (FYVE type) family protein	S.X.	H.G.	Please select
0.46	66.5	1615173_at	CF518560	hypothetical protein LOC100260965	-	1e-112	At4g35860	ATGB2 (GTP-BINDING 2)	S.X.	H.G.	Please select
0.40	57.7	1611075_at	BM436771	hypothetical protein LOC100246965	-	7e-5	At1g02680	TAF13 (TBP-ASSOCIATED FACTOR 13)	S.X.	H.G.	Please select
0.29	37.7	1616059_at	CF215666	hypothetical protein LOC100245604	-	7e-6	At4g24990	ATGP4	S.X.	H.G.	Please select
0.25	30.5	1610715_s_at	CF212007	hypothetical protein LOC100258507	-	4e-56	At2g05630	autophagy 8d (APG8d)	S.X.	H.G.	Please select
0.14	14.4	1608283_at	CD799618	hypothetical protein LOC100258698	-	2e-1	At1g26795	self-incompatibility protein-related	S.X.	H.G.	Please select
0.14	14.4	1607998_at	BQ793788	hypothetical protein LOC100245820	-	4e-24	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	S.X.	H.G.	Please select
0.11	11.3	1614062_at	CB982394	hypothetical protein LOC100245196	-	5e+0	At5g07630	lipid transporter	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.9	93.8	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0	88.2	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.74	0	1124	1616571_at	CF205416.1	-	-	1e+0	At5g39645	-	C.G.	S.X.	Please select
0.03	1e-1	36	1620415_at	CB972472	hypothetical protein LOC100242363	-	1e+0	At4g24275	-	C.G.	S.X.	Please select
0.02	5e-1	34	1612305_at	BQ797467	hypothetical protein LOC100263408	-	2e-12	At3g15660	GRX4 (GLUTAREDOXIN 4)	C.G.	S.X.	Please select
0.02	5e-1	34	1606922_at	CB344152	hypothetical protein LOC100246883	-	6e-12	At1g29800	phosphoinositide binding / zinc ion binding	C.G.	S.X.	Please select
0.02	2e+0	32	1622561_at	CF513450	hypothetical protein LOC100264847	-	6e+0	Atmg00620	-	C.G.	S.X.	Please select
0.02	2e+0	32	1619956_at	CB974049	-	-	2e-1	At3g60540	sec61beta family protein	C.G.	S.X.	Please select
0.01	2e+0	32	1619616_at	BQ798767	hypothetical protein LOC100254733	-	3e-9	At2g29500	17.6 kDa class I small heat shock protein (HSP17.6B-CI)	C.G.	S.X.	Please select
0.02	2e+0	32	1619592_at	CF415387	hypothetical protein LOC100255579	-	1e-23	At2g31400	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.03	2e+0	32	1616983_at	CF207498	hypothetical protein LOC100254117	-	1e+0	At5g45130	RHA1 (RAB HOMOLOG 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	5e-19	95	Arabidopsis thaliana	At3g43230	823398	zinc finger (FYVE type) family protein	F:phosphoinositide binding, zinc ion binding;P:signal transduction;C:cellular_component unknown;MFOPBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	1e-51	204	Glycine max	GmaAffx.22418.1.S1_at	BU091004	-	-	4e-11	At3g43230	zinc finger (FYVE type) family protein	C.G.	S.X.	Please select
0.29	4e-18	91	Hordeum vulgare	Contig19380_at	Contig19380	-	-	2e-9	At3g43230	zinc finger (FYVE type) family protein	C.G.	S.X.	Please select
0.09	2e-8	61	Oryza sativa	Os07g0272400	AK102876.1	-	Protein of unknown function DUF500 family protein	2e-11	At3g43230	zinc finger (FYVE type) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	8e-65	248	Populus trichocarpa	PtpAffx.14953.1.S1_at	CV238321	-	-	4e-26	At3g43230	zinc finger (FYVE type) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	7e-3	42	Triticum aestivum	Ta.23036.1.S1_at	CA653214	-	-	1e+0	At4g02950	ubiquitin family protein	C.G.	S.X.	Please select
0.06	5e-2	38	Zea mays	Zm.15780.1.A1_at	CD484576	-	-	4e+0	At3g01472	CPuORF33 (Conserved peptide upstream open reading frame 33)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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