Gene omics information

Query gene ID	1608138_s_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	84.3	1608138_s_at	CB342671	-	-	0	Atcg00120	-	S.X.	H.G.	Please select
0.77	92.3	1610039_s_at	CA817529	similar to NADH-plastoquinone oxidoreductase subunit K	-	0	Atcg00480	-	S.X.	H.G.	Please select
0.63	84.3	1616688_s_at	CB342776	-	-	0	Atcg01050	-	S.X.	H.G.	Please select
0.60	81.9	1613581_at	CB981734	hypothetical protein LOC100262899	-	1e-17	At3g17800	-	S.X.	H.G.	Please select
0.50	72.7	1614231_s_at	CB970079	hypothetical protein LOC100245250	-	3e-5	At3g15360	TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4)	S.X.	H.G.	Please select
0.44	64.1	1616847_s_at	CA816751	hypothetical protein LOC100267942	-	2e-12	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.8	93.4	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM147736	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	65
2.0	88.2	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
2.0	88.2	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
2.0	88.2	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0	88.2	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.99	0	7515	1614676_s_at	BQ793152	ATP synthase subunit a, chloroplastic	-	0	Atcg00120	-	C.G.	S.X.	Please select
0.99	0	7515	1609916_s_at	CD005933	hypothetical protein LOC100266722	-	0	Atcg00120	-	C.G.	S.X.	Please select
0.12	0	886	1619209_at	CA817415	-	-	2e+0	At1g76680	OPR1	C.G.	S.X.	Please select
0.06	2e-113	410	1618524_x_at	CF202257.1	-	-	7e+0	At3g57840	self-incompatibility protein-related	C.G.	S.X.	Please select
0.06	9e-97	355	1617715_at	CB345894	-	-	9e+0	At4g31790	diphthine synthase, putative (DPH5)	C.G.	S.X.	Please select
0.03	5e-40	167	1614615_s_at	CF203062.1	-	-	4e+0	At2g04170	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.04	4e-25	117	1614890_at	CF512294	-	-	3e-13	Atcg00150	-	C.G.	S.X.	Please select
0.01	1e-3	46	1621184_at	CD009048	-	-	3e+1	At3g02555	unknown protein	C.G.	S.X.	Please select
0.01	1e-3	46	1617413_at	CD009048	-	-	3e+1	At3g02555	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	0	1784	Arabidopsis thaliana	Atcg00120	-	-	Encodes the ATPase alpha subunit, which is a subunit of ATP synthase and part of the CF1 portion which catalyzes the conversion of ADP to ATP using the proton motive force. This complex is located in the thylakoid membrane of the chloroplast.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.27	0	2044	Glycine max	Gma.17682.1.S1_at	BG839162	-	-	0	Atcg00120	-	C.G.	S.X.	Please select
0.03	7e-28	127	Hordeum vulgare	Contig22078_at	Contig22078	-	-	6e-2	At1g10100	unknown protein	C.G.	S.X.	Please select
0.29	0	1471	Oryza sativa	Os04g0235700	X15901.1	-	-	0	Atcg00120	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	0	1080	Populus trichocarpa	Ptp.7518.1.S1_at	DN483594	hypothetical protein	-	0	Atcg00120	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.18	5e-92	341	Triticum aestivum	TaAffx.128946.1.A1_at	CA680670	-	-	3e-40	Atcg00160	-	C.G.	S.X.	Please select
0.29	0	1431	Zea mays	ZmAffx.1434.1.S1_at	11990232-19	-	-	0	Atcg00120	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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