CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1608135_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 83.2 1608135_at CF206119.1 - - 1e+0 At2g47650 UXS4 (UDP-XYLOSE SYNTHASE 4) S.X. H.G.
0.73 90.8 1614154_at CF568802 - - 7e-8 At1g72440 EDA25 (embryo sac development arrest 25) S.X. H.G.
0.40 57.7 1610470_at CF202637.1 - - 1e-7 At5g15150 ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3) S.X. H.G.
0.40 57.7 1618712_at CB003306 - - 3e-1 At4g21330 DYT1 (DYSFUNCTIONAL TAPETUM 1) S.X. H.G.
0.28 37.7 1617917_at CF405637 - - 4e+0 At1g53100 acetylglucosaminyltransferase S.X. H.G.
0.20 22.4 1620333_at CF608264 - - 1e-10 At3g08020 protein binding / zinc ion binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.1 98.1 GSM147708 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 37
4.6 97.6 GSM436396 V. riparia (VR, PI588259) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.6 97.6 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
4.4 97.3 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.3 97.2 GSM147729 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 58
4.0 96.7 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.0 96.7 GSM436369 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.8 96.4 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM147720 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 49
3.4 95.5 GSM147727 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 56
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.88 0 864 1615414_x_at CF206119.1 - - 1e+0 At2g47650 UXS4 (UDP-XYLOSE SYNTHASE 4) C.G. S.X.
0.88 0 864 1610267_s_at CF206119.1 hypothetical protein LOC100241051 - 1e+0 At2g47650 UXS4 (UDP-XYLOSE SYNTHASE 4) C.G. S.X.
0.66 5e-170 595 1620629_x_at CF203228.1 - - 7e-43 At1g31340 RUB1 (RELATED TO UBIQUITIN 1) C.G. S.X.
0.30 2e-70 264 1609603_s_at CB340030 hypothetical protein LOC100241051 - 1e-71 At1g31340 RUB1 (RELATED TO UBIQUITIN 1) C.G. S.X.
0.03 4e-1 34 1615150_at CB973162 similar to 60S ribosomal protein L34 - 1e-34 At1g69620 RPL34 (RIBOSOMAL PROTEIN L34) C.G. S.X.
0.02 2e+0 32 1622060_at BM436271 - - 3e-32 At5g65780 ATBCAT-5 C.G. S.X.
0.01 2e+0 32 1620825_s_at CB972353 hypothetical protein LOC100253453 - 1e-2 At1g33680 RNA binding / nucleic acid binding C.G. S.X.
0.02 2e+0 32 1618259_at BM436271 hypothetical LOC100245758 - 3e-32 At5g65780 ATBCAT-5 C.G. S.X.
0.02 2e+0 32 1617435_at CF604886 hypothetical protein LOC100248075 - 2e-5 At3g13990 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 34 Arabidopsis thaliana At2g47650 819378 UXS4 (UDP-XYLOSE SYNTHASE 4) encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes. - - - C.G. S.X.
0.03 2e+0 34 Glycine max GmaAffx.62649.1.S1_at BM187811 - - 1e-6 At4g27960 UBC9 (UBIQUITIN CONJUGATING ENZYME 9) C.G. S.X.
0.02 1e+1 30 Hordeum vulgare Contig9013_at Contig9013 - - 4e-20 At1g80230 cytochrome c oxidase family protein C.G. S.X.
0.02 4e-2 40 Oryza sativa Os10g0145100 AK073677.1 - Cyclin-like F-box domain containing protein 2e-1 At5g64690 neurofilament triplet H protein-related C.G. S.X.
0.03 7e+0 32 Populus trichocarpa PtpAffx.224487.1.S1_at pmrna43068 hypothetical protein - 2e-1 At3g63190 RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR) C.G. S.X.
0.04 1e+0 34 Triticum aestivum Ta.16460.1.S1_at CA606709 - - 1e+1 At5g54660 heat shock protein-related C.G. S.X.
0.03 9e+0 30 Zea mays Zm.4486.1.A1_at AI734407 - - 3e+0 At5g03345 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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