CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1608096_at

Gene name hypothetical protein LOC100264515

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1608096_at CB978907 hypothetical protein LOC100264515 - 6e-59 At5g39850 40S ribosomal protein S9 (RPS9C) S.X. H.G.
0.83 94.6 1610560_at BQ797613 hypothetical protein LOC100258347 - 7e-52 At3g47370 40S ribosomal protein S20 (RPS20B) S.X. H.G.
0.80 93.6 1613860_s_at CF512506 cyc07 - 6e-38 At3g04840 40S ribosomal protein S3A (RPS3aA) S.X. H.G.
0.73 90.8 1610095_s_at CF516594 hypothetical protein LOC100257471 - 9e-49 At5g23900 60S ribosomal protein L13 (RPL13D) S.X. H.G.
0.67 87.9 1610092_at BQ794603 hypothetical protein LOC100250286 - 2e-18 At5g18380 40S ribosomal protein S16 (RPS16C) S.X. H.G.
0.57 79.8 1621022_at BQ794425 hypothetical protein LOC100255295 - 7e-43 At3g02080 40S ribosomal protein S19 (RPS19A) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.6 92.5 GSM436396 V. riparia (VR, PI588259) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436406 V. riparia (VR, PI588259) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436368 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436400 V. riparia (VR, PI588259) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436408 V. riparia (VR, PI588259) LD, 15h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
1.9 87.2 GSM436416 V. riparia (VR, PI588259) SD, 13h 7 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436424 V. riparia (VR, PI588259) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.55 1e-131 468 1617765_at CF512246 hypothetical protein LOC100260300 - 4e-38 At5g39850 40S ribosomal protein S9 (RPS9C) C.G. S.X.
0.55 1e-131 468 1610517_s_at CF512246 hypothetical protein LOC100260300 - 4e-38 At5g39850 40S ribosomal protein S9 (RPS9C) C.G. S.X.
0.55 1e-125 448 1619416_at CB348568 hypothetical protein LOC100267189 - 9e-18 At5g39850 40S ribosomal protein S9 (RPS9C) C.G. S.X.
0.59 2e-114 410 1611122_at CF568874 - - 1e-36 At5g39850 40S ribosomal protein S9 (RPS9C) C.G. S.X.
0.02 1e-1 36 1614043_at CB348418 hypothetical protein LOC100243305 - 4e-57 At5g13520 peptidase M1 family protein C.G. S.X.
0.02 5e-1 34 1611857_at CA810729 hypothetical protein LOC100261569 - 3e-21 At3g50690 leucine-rich repeat family protein C.G. S.X.
0.03 2e+0 32 1622691_s_at AF176496.1 hypothetical protein LOC100264325 - 7e-13 At1g09640 elongation factor 1B-gamma, putative / eEF-1B gamma, putative C.G. S.X.
0.02 2e+0 32 1622647_at CD713014 - - 1e+0 At3g18990 VRN1 (REDUCED VERNALIZATION RESPONSE 1) C.G. S.X.
0.02 2e+0 32 1622267_at CF516149 hypothetical protein LOC100250166 - 7e-2 At1g09500 cinnamyl-alcohol dehydrogenase family / CAD family C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.46 6e-59 228 Arabidopsis thaliana At5g39850 833981 40S ribosomal protein S9 (RPS9C) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, membrane;POBMFA - - - C.G. S.X.
0.53 2e-74 280 Glycine max Gma.11157.1.S1_s_at AI856076 - - 1e-35 At5g15200 40S ribosomal protein S9 (RPS9B) C.G. S.X.
0.42 8e-35 147 Hordeum vulgare Contig1810_at Contig1810 - - 6e-31 At5g39850 40S ribosomal protein S9 (RPS9C) C.G. S.X.
0.33 2e-57 224 Oryza sativa Os.12189.1.S1_at - - - 0 C.G. S.X.
0.56 2e-108 393 Populus trichocarpa PtpAffx.24713.1.A1_s_at CV249144 hypothetical protein - 1e-53 At5g39850 40S ribosomal protein S9 (RPS9C) C.G. S.X.
0.43 2e-21 103 Triticum aestivum TaAffx.8403.1.S1_at CA626068 - - 9e-29 At5g39850 40S ribosomal protein S9 (RPS9C) C.G. S.X.
0.43 3e-43 174 Zea mays Zm.7072.1.S1_at CA403424 40S ribosomal protein S9 - 4e-20 At5g15200 40S ribosomal protein S9 (RPS9B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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