Gene omics information

Query gene ID	1608087_s_at
Gene name	glyceraldehyde-3-phosphate dehydrogenase
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	66.5	1608087_s_at	CF568810	glyceraldehyde-3-phosphate dehydrogenase	-	2e-103	At1g13440	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	S.X.	H.G.	Please select
0.80	93.6	1608096_at	CB978907	hypothetical protein LOC100264515	-	6e-59	At5g39850	40S ribosomal protein S9 (RPS9C)	S.X.	H.G.	Please select
0.63	84.3	1621022_at	BQ794425	hypothetical protein LOC100255295	-	7e-43	At3g02080	40S ribosomal protein S19 (RPS19A)	S.X.	H.G.	Please select
0.61	83.2	1610560_at	BQ797613	hypothetical protein LOC100258347	-	7e-52	At3g47370	40S ribosomal protein S20 (RPS20B)	S.X.	H.G.	Please select
0.61	83.2	1610092_at	BQ794603	hypothetical protein LOC100250286	-	2e-18	At5g18380	40S ribosomal protein S16 (RPS16C)	S.X.	H.G.	Please select
0.59	80.6	1613860_s_at	CF512506	cyc07	-	6e-38	At3g04840	40S ribosomal protein S3A (RPS3aA)	S.X.	H.G.	Please select
0.50	72.7	1610193_at	CF214569	hypothetical protein LOC100242819	-	1e-53	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.3	90.7	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	2e-94	343	1615814_at	CB920915	hypothetical protein LOC100264789	-	0	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	C.G.	S.X.	Please select
0.03	8e-2	36	1616538_at	CB347766	hypothetical protein LOC100263791	-	2e+0	At2g15327	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	1622824_at	BQ794106	hypothetical protein LOC100266096	-	5e-73	At4g00720	ATSK32 (SHAGGY-LIKE PROTEIN KINASE 32)	C.G.	S.X.	Please select
0.02	1e+0	32	1616785_at	CF211839	hypothetical protein LOC100259648	-	1e-32	At4g14560	IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE)	C.G.	S.X.	Please select
0.03	1e+0	32	1616217_at	CB003366	-	-	5e+0	At4g13830	J20 (DNAJ-LIKE 20)	C.G.	S.X.	Please select
0.03	1e+0	32	1612410_at	CB003366	-	-	5e+0	At4g13830	J20 (DNAJ-LIKE 20)	C.G.	S.X.	Please select
0.03	1e+0	32	1610658_at	CD719292	-	-	5e+0	At5g16160	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	1606828_at	CD719292	-	-	5e+0	At5g16160	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	1622101_at	CB035816	-	-	1e+0	At2g36010	E2F3 (E2F TRANSCRIPTION FACTOR 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	2e-103	375	Arabidopsis thaliana	At1g13440	837904	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	F:NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity;P:response to oxidative stress, response to cadmium ion, gluconeogenesis, defense response to bacterium, glycolysis;C:in 8 components;BOPFMA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.65	2e-58	226	Glycine max	GmaAffx.89821.1.A1_at	CK606602	glyceraldehyde-3-phosphate dehydrogenase /// glyceraldehyde-3-dehydrogenase C subunit	-	5e-64	At1g13440	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	C.G.	S.X.	Please select
0.39	1e-63	242	Hordeum vulgare	Contig149_at	Contig149	glyceraldehyde 3-phosphate dehydrogenase	-	3e-148	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	C.G.	S.X.	Please select
0.41	1e-87	323	Oryza sativa	Os04g0486600	BI797548	-	Glyceraldehyde-3-phosphate dehydrogenase,cytosolic 3 (EC 1.2.1.12)	2e+0	At1g09220	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.60	3e-88	325	Populus trichocarpa	PtpAffx.85451.1.S1_s_at	CV131357	hypothetical protein	-	8e-129	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.48	1e-43	176	Triticum aestivum	TaAffx.113063.3.S1_at	CA620687	-	-	3e-38	At1g13440	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	C.G.	S.X.	Please select
0.39	7e-77	286	Zea mays	Zm.2601.1.S1_at	U45856.1	cytosolic glyceroldehyde-3-phosphate dehydrogenase GAPC3 /// glyceraldehyde-3-phosphate dehydrogenase	-	3e-139	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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