Gene omics information

Query gene ID 1608060_at
Gene name
Organism Vitis vinifera


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.4666.51608060_atCF210997--2e-1At2g01420PIN4 (PIN-FORMED 4)S.X.H.G.
0.3548.51612648_atCD798203hypothetical protein LOC100260257-3e-1At1g42960-S.X.H.G.
0.3141.31616690_atCB971063--2e+0At3g09800protein bindingS.X.H.G.
0.2734.01608066_atCB342796hypothetical protein LOC100254977-5e-1At5g43570serine-type endopeptidase inhibitorS.X.H.G.
0.2530.51619325_atCF211836hypothetical protein LOC100263459-6e-4At3g14660CYP72A13S.X.H.G.
0.2327.51614805_atCF207170--1e+0At1g48730unknown proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
8.899.5GSM322361genotype: Chardonnay - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infection
8.799.5GSM322369genotype: Incrocio Manzoni - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infection
7.899.3GSM322363genotype: Chardonnay - disease type: Bois Noir infected - rep3GSE12842Gene expression in grapevine in response to Bois noir infection
7.199.1GSM322368genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infection
5.898.6GSM322364genotype: Chardonnay - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infection
5.298.2GSM287899Red soft berry C13 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initation
4.397.2GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infection
3.796.2GSM287903Red soft berry A7 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initation
3.696.0GSM322366genotype: Chardonnay - disease type: Healthy - rep3GSE12842Gene expression in grapevine in response to Bois noir infection
3.495.5GSM287900Red soft berry C15 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initation
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.033e-1341619509_atCB344814--6e+0At4g26030transcription factorC.G.S.X.
0.033e-1341617592_atCB971943hypothetical protein LOC100259923-6e-3At1g62990KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7)C.G.S.X.
0.033e-1341610625_atCD802063hypothetical protein LOC100259247-6e-30At4g08960phosphotyrosyl phosphatase activator (PTPA) family proteinC.G.S.X.
0.031e+0321620292_atCA817018hypothetical protein LOC100264686-3e-1At2g45434unknown proteinC.G.S.X.
0.021e+0321617403_atCF208495--8e+0At5g60810unknown proteinC.G.S.X.
0.031e+0321612092_atCD011489hypothetical protein LOC100264459-4e+0At3g23710chloroplast inner membrane import protein Tic22, putativeC.G.S.X.
0.021e+0321610071_atBQ797708hypothetical protein LOC100253046-2e-4At1g65680ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)C.G.S.X.
0.035e+0301622325_a_atCD801898similar to CDPK-like protein-4e+0At4g07350unknown proteinC.G.S.X.
0.025e+0301621722_atCB973627hypothetical protein LOC100267520-8e-43At1g53670MSRB1 (methionine sulfoxide reductase B 1)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.022e-136Arabidopsis thalianaAt2g01420814670PIN4 (PIN-FORMED 4)Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452).---C.G.S.X.
0.043e-136Glycine maxGmaAffx.67600.1.S1_atAW164368--1e+1At5g64930CPR5 (CONSTITUTIVE EXPRESSION OF PR GENES 5)C.G.S.X.
0.064e-1477Hordeum vulgareContig18157_atContig18157--1e-8At4g22720glycoprotease M22 family proteinC.G.S.X.
0.028e+032Oryza sativaOs11g06686009639.m04140-Hypothetical protein2e+0At5g65080MAF5 (MADS AFFECTING FLOWERING 5)C.G.S.X.
0.083e-1479Populus trichocarpaPtpAffx.222271.1.S1_atpmrna39572hypothetical protein-2e-108At4g22720glycoprotease M22 family proteinC.G.S.X.
0.044e+032Triticum aestivumTaAffx.30302.1.S1_atCA626366--4e-1At4g20870FAH2 (FATTY ACID HYDROXYLASE 2)C.G.S.X.
0.043e-238Zea maysZm.6287.1.A1_atAI691262--3e+0At3g51020unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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