Gene omics information

Query gene ID	1608005_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1608005_at	CF204974.1	-	-	1e+0	At1g48730	unknown protein	S.X.	H.G.	Please select
0.56	79.4	1607695_at	CF208550	-	-	2e-9	At1g15880	GOS11 (golgi snare 11)	S.X.	H.G.	Please select
0.43	61.5	1622102_at	CD010899	-	-	1e+0	At5g04047	-	S.X.	H.G.	Please select
0.33	45.7	1616292_at	CF209464	-	-	2e+0	At5g19740	peptidase M28 family protein	S.X.	H.G.	Please select
0.31	41.3	1618080_at	CF202367.1	-	-	2e+0	At4g28556	RIC7	S.X.	H.G.	Please select
0.14	14.4	1615875_at	CB981816	hypothetical protein LOC100262865	-	6e-2	At3g01516	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.3	99.2	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
6.2	98.8	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
4.6	97.6	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
4.5	97.5	GSM436398	V. riparia (VR, PI588259) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
4.3	97.2	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
3.9	96.6	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
3.8	96.4	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
3.8	96.4	GSM147712	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	41
3.5	95.7	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.78	0	726	1614805_at	CF207170	-	-	1e+0	At1g48730	unknown protein	C.G.	S.X.	Please select
0.31	2e-43	174	1622102_at	CD010899	-	-	1e+0	At5g04047	-	C.G.	S.X.	Please select
0.31	2e-43	174	1609493_at	CD010899	-	-	1e+0	At5g04047	-	C.G.	S.X.	Please select
0.32	2e-40	165	1607377_at	CB977028	-	-	4e+0	At3g22436	unknown protein	C.G.	S.X.	Please select
0.17	2e-18	91	1608291_at	CF568931	-	-	4e+0	At2g45850	DNA-binding family protein	C.G.	S.X.	Please select
0.26	2e-12	71	1613453_at	CD802171	-	-	3e+0	At5g59380	MBD6	C.G.	S.X.	Please select
0.17	2e-12	71	1613600_at	CF208047	-	-	1e+0	At3g32040	geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative	C.G.	S.X.	Please select
0.10	1e-10	65	1609120_at	CD799923	-	-	4e+0	At1g12423	unknown protein	C.G.	S.X.	Please select
0.16	1e-10	65	1609182_at	CB981231	-	-	1e+0	At3g47860	apolipoprotein D-related	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At1g48730	841295	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	GmaAffx.41523.2.S1_at	BM308199	SNI1	-	3e+0	At4g03580	-	C.G.	S.X.	Please select
0.03	6e-1	34	Hordeum vulgare	HVSMEm0001A07r2_at	HVSMEm0001A07r2	-	-	3e+0	Atcg00440	-	C.G.	S.X.	Please select
0.03	1e+1	32	Oryza sativa	OsAffx.31134.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.206985.1.S1_at	pmrna13839	hypothetical protein	-	1e-1	At4g18975	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	6e+0	32	Triticum aestivum	TaAffx.111882.1.S1_at	CA631302	-	-	4e-1	At5g64090	-	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	ZmAffx.426.1.A1_at	AI676860	-	-	5e-2	At5g43210	endo/excinuclease amino terminal domain-containing protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage