CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1607995_at

Gene name hypothetical protein LOC100266278

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 84.3 1607995_at CB007776 hypothetical protein LOC100266278 - 9e-29 At2g07360 SH3 domain-containing protein S.X. H.G.
0.73 90.8 1622091_at CD802360 hypothetical protein LOC100242189 - 4e+0 At2g01360 - S.X. H.G.
0.71 89.5 1615989_at BQ796654 hypothetical protein LOC100255339 - 2e-21 At2g37160 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.67 87.9 1610656_s_at CF404428 hypothetical protein LOC100257829 - 2e-1 At1g09932 phosphoglycerate/bisphosphoglycerate mutase-related S.X. H.G.
0.61 83.2 1607710_at CF213883 hypothetical protein LOC100257507 - 2e-3 At1g31940 unknown protein S.X. H.G.
0.29 37.7 1619649_at BQ793844 hypothetical protein LOC100259453 - 1e+0 At2g34860 EDA3 (embryo sac development arrest 3) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.4 95.5 GSM147731 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 60
3.1 94.6 GSM147719 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 48
2.9 93.8 GSM147725 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 54
2.8 93.4 GSM147724 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 53
2.6 92.5 GSM147737 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 66
2.6 92.5 GSM287879 Green hard berry C19 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.6 92.5 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.6 92.5 GSM287894 Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.6 92.5 GSM147742 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 71
2.6 92.5 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 999 1611761_at CB007776 - - 9e-29 At2g07360 SH3 domain-containing protein C.G. S.X.
0.02 3e-1 34 1616191_s_at CB971061 hypothetical protein LOC100253493 - 6e-48 At2g30490 C4H (CINNAMATE-4-HYDROXYLASE) C.G. S.X.
0.02 3e-1 34 1610821_at CB971061 hypothetical protein LOC100253493 - 6e-48 At2g30490 C4H (CINNAMATE-4-HYDROXYLASE) C.G. S.X.
0.02 1e+0 32 1619325_at CF211836 hypothetical protein LOC100263459 - 6e-4 At3g14660 CYP72A13 C.G. S.X.
0.03 1e+0 32 1611893_x_at CF201821.1 - - 2e-1 At5g05210 nucleolar matrix protein-related C.G. S.X.
0.03 1e+0 32 1610907_at CD718614 - - 3e-1 At2g46160 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 1e+0 32 1607930_at CF201821.1 - - 2e-1 At5g05210 nucleolar matrix protein-related C.G. S.X.
0.03 1e+0 32 1607067_at CD718614 hypothetical protein LOC100241330 - 3e-1 At2g46160 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 1e+0 32 1606935_at CB969531 hypothetical protein LOC100262240 - 6e-51 At1g79440 ALDH5F1 C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 9e-29 127 Arabidopsis thaliana At2g07360 815305 SH3 domain-containing protein F:binding;P:unknown;C:cytosol, nucleus, plasma membrane, membrane;OPMFB - - - C.G. S.X.
0.30 3e-26 119 Glycine max GmaAffx.88226.1.S1_at CB063419 - - 9e-20 At2g07360 SH3 domain-containing protein C.G. S.X.
0.06 3e-2 38 Hordeum vulgare Contig12593_at Contig12593 - - 2e-4 At2g07360 SH3 domain-containing protein C.G. S.X.
0.04 9e-12 71 Oryza sativa Os03g0265700 AK068453.1 - SH3 domain containing protein 6e-50 At2g07360 SH3 domain-containing protein C.G. S.X.
0.19 5e-28 125 Populus trichocarpa PtpAffx.9703.1.A1_a_at CV226340 hypothetical protein - 3e-11 At2g07360 SH3 domain-containing protein C.G. S.X.
0.04 2e+1 30 Triticum aestivum TaAffx.87130.1.S1_x_at BJ245629 - - 2e-2 At2g43150 proline-rich extensin-like family protein C.G. S.X.
0.04 7e+0 30 Zea mays ZmAffx.38.1.A1_at AI657470 - - 2e+0 At4g04423 endo-1,3(4)-beta-glucanase C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage