Gene omics information

Query gene ID 1607945_at
Gene name pectate lyase
Organism Vitis vinifera


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9198.81607945_atAF243475.1pectate lyase-1e-39At1g67750pectate lyase family proteinS.X.H.G.
0.2530.51621848_atCB339439hypothetical protein LOC100241572-3e-10At3g25400-S.X.H.G.
0.023.21606461_atCF203056.1--1e+0At1g27130ATGSTU13 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13)S.X.H.G.
0.012.11609001_atCB977196hypothetical protein LOC100258330-1e+0At3g19660unknown proteinS.X.H.G.
0.012.11616547_atBQ798895hypothetical protein LOC100256265-5e-21At5g23230NIC2 (NICOTINAMIDASE 2)S.X.H.G.
0.000.51610311_atCF373485similar to arabinogalactan-protein; AGP-1e-4At2g33850unknown proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
21.5100.0GSM436418V. riparia (VR, PI588259) SD, 13h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancy
14.299.9GSM322362genotype: Chardonnay - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infection
13.499.8GSM322363genotype: Chardonnay - disease type: Bois Noir infected - rep3GSE12842Gene expression in grapevine in response to Bois noir infection
10.699.7GSM436407V. riparia (VR, PI588259) LD, 15h 42 days - rep2GSE17502Photoperiod regulation of grape bud dormancy
10.599.7GSM322370genotype: Incrocio Manzoni - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infection
10.099.6GSM436421V. riparia (VR, PI588259) SD, 13h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancy
9.999.6GSM436423V. riparia (VR, PI588259) SD, 13h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancy
8.699.5GSM436419V. riparia (VR, PI588259) SD, 13h 14 days - rep2GSE17502Photoperiod regulation of grape bud dormancy
7.799.3GSM436399V. riparia (VR, PI588259) LD, 15h 14 days - rep3GSE17502Photoperiod regulation of grape bud dormancy
4.397.2GSM322361genotype: Chardonnay - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infection
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.103e-371551618576_atBQ800615pectate lyase PL1-like-4e-124At4g13710pectate lyase family proteinC.G.S.X.
0.052e-14791617015_atCF209172hypothetical protein LOC100251082-3e-10At3g07010pectate lyase family proteinC.G.S.X.
0.025e-2381617322_atBQ796754--2e+0At5g66700HB53C.G.S.X.
0.013e+0321617669_atCF210717hypothetical protein LOC100265782-2e-34At4g35230BSK1 (BR-SIGNALING KINASE 1)C.G.S.X.
0.013e+0321614298_atCF403239hypothetical protein LOC100256505-7e-40At1g08465YAB2 (YABBY2)C.G.S.X.
0.013e+0321610136_a_atBQ792941similar to Elongation factor Tu, chloroplastic-8e-56At4g20360ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B)C.G.S.X.
0.023e+0321608752_atCF212288similar to EMB2733/ESP3 (EMBRYO DEFECTIVE 2733); ATP-dependent RNA helicase-5e-12At1g32490ESP3 (ENHANCED SILENCING PHENOTYPE 3)C.G.S.X.
0.013e+0321608095_atCF211950hypothetical protein LOC100259526-2e-32At2g259103'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing proteinC.G.S.X.
0.011e+1301622824_atBQ794106hypothetical protein LOC100266096-5e-73At4g00720ATSK32 (SHAGGY-LIKE PROTEIN KINASE 32)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.301e-39165Arabidopsis thalianaAt1g67750843100pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO---C.G.S.X.
0.311e-27125Glycine maxGma.1326.3.S1_atAI442263pectate lyase precursor-1e-47At4g24780pectate lyase family proteinC.G.S.X.
0.182e-27123Hordeum vulgareContig11004_atContig11004--3e-22At3g07010pectate lyase family proteinC.G.S.X.
0.214e-38161Oryza sativaOs04g0137100AK060609.1-Pectate lyase (Fragment)8e-6At3g07010pectate lyase family proteinC.G.S.X.
0.571e-169597Populus trichocarpaPtpAffx.200992.1.S1_s_atpmrna1952hypothetical protein-7e-29At3g27400pectate lyase family proteinC.G.S.X.
0.129e-1685Triticum aestivumTa.11160.1.S1_s_atBQ169530--5e-14At3g07010pectate lyase family proteinC.G.S.X.
0.111e-654Zea maysZmAffx.854.1.S1_atAI770665hypothetical protein LOC100273705-5e-8At4g24780pectate lyase family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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