CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1607880_at

Gene name hypothetical protein LOC100263570

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 92.3 1607880_at BQ793902 hypothetical protein LOC100263570 - 4e-2 At2g02800 APK2B (PROTEIN KINASE 2B) S.X. H.G.
0.80 93.6 1608159_at CB969766 hypothetical protein LOC100242214 - 8e-14 At4g11410 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.71 89.5 1610941_at CD714898 - - 1e-11 At1g64950 CYP89A5 S.X. H.G.
0.67 87.9 1614972_at CB969853 hypothetical protein LOC100242214 - 7e-5 At4g23420 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.61 83.2 1620883_at CA812348 - - 4e-41 Atcg01250 - S.X. H.G.
0.22 25.6 1616224_at CB978316 - - 1e+1 At5g06450 nucleic acid binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
49.4 100.0 GSM322366 genotype: Chardonnay - disease type: Healthy - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
38.4 100.0 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
34.1 100.0 GSM322365 genotype: Chardonnay - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
21.0 99.9 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
11.8 99.8 GSM322364 genotype: Chardonnay - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
8.1 99.4 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
6.1 98.7 GSM322370 genotype: Incrocio Manzoni - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
5.7 98.5 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.5 97.5 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.5 95.7 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.42 1e-147 521 1607367_at CF203364.1 - - 4e-4 At5g38240 serine/threonine protein kinase, putative C.G. S.X.
0.24 2e-20 99 1606455_at BQ794948 hypothetical protein LOC100267689 - 1e-1 At3g46930 protein kinase family protein C.G. S.X.
0.10 4e-12 71 1612151_at AY427146.1 - - 4e+0 At1g23600 unknown protein C.G. S.X.
0.10 4e-12 71 1608367_at AY427146.1 - - 4e+0 At1g23600 unknown protein C.G. S.X.
0.13 9e-10 63 1614830_at CD800311 hypothetical protein LOC100253816 - 6e-2 At4g32870 unknown protein C.G. S.X.
0.03 3e-6 52 1610386_at CF404528 hypothetical protein LOC100263755 /// hypothetical protein LOC100242248 /// hypothetical protein LOC100245376 /// hypothetical protein LOC100251011 /// hypothetical protein LOC100262350 /// hypothetical protein LOC100262818 /// hypothetical protein LOC100263363 /// hypothetical protein LOC100265356 - 4e-3 At3g24790 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase C.G. S.X.
0.02 2e-4 46 1616239_at CB968908 hypothetical protein LOC100262073 - 2e-6 At5g60900 RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1) C.G. S.X.
0.03 2e-4 46 1608318_at CD802434 hypothetical LOC100241440 - 1e-3 At2g44580 protein binding / zinc ion binding C.G. S.X.
0.04 8e-4 44 1619374_at CD010366 - - 5e+0 At5g42790 PAF1 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-2 40 Arabidopsis thaliana At2g02800 814810 APK2B (PROTEIN KINASE 2B) Encodes protein kinase APK2b. - - - C.G. S.X.
0.11 1e-24 115 Glycine max Gma.16705.1.S1_at BM177533 - - 2e-1 At4g04500 protein kinase family protein C.G. S.X.
0.10 2e-11 69 Hordeum vulgare Contig7367_at Contig7367 - - 2e-3 At1g66920 serine/threonine protein kinase, putative C.G. S.X.
0.09 1e-13 79 Oryza sativa Os01g0117300 9629.m00191 - Protein kinase domain containing protein 2e-1 At5g38280 PR5K C.G. S.X.
0.23 6e-42 173 Populus trichocarpa PtpAffx.35408.1.S1_at DN492188 hypothetical protein - 2e-3 At3g47570 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.12 3e-12 73 Triticum aestivum TaAffx.53446.1.S1_at CA692249 - - 6e-2 At1g61860 protein kinase, putative C.G. S.X.
0.04 1e-3 44 Zea mays Zm.12900.1.S1_at CA401269 - - 2e+0 At5g38250 serine/threonine protein kinase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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