Gene omics information

Query gene ID	1607877_x_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1607877_x_at	CF202836.1	-	-	3e+1	Atcg01250	-	S.X.	H.G.	Please select
0.83	94.6	1620097_x_at	CF202968.1	-	-	8e-1	At3g08000	RNA-binding protein, putative	S.X.	H.G.	Please select
0.80	93.6	1610332_x_at	CF204509.1	-	-	8e-1	At3g08000	RNA-binding protein, putative	S.X.	H.G.	Please select
0.63	84.3	1618679_s_at	CB343106	-	-	4e-83	Atcg00280	-	S.X.	H.G.	Please select
0.42	60.1	1609916_s_at	CD005933	hypothetical protein LOC100266722	-	0	Atcg00120	-	S.X.	H.G.	Please select
0.38	53.6	1621184_at	CD009048	-	-	3e+1	At3g02555	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.2	98.8	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
5.8	98.6	GSM147732	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	61
5.8	98.6	GSM147736	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	65
5.6	98.4	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
5.5	98.4	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
5.4	98.3	GSM147737	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	66
5.3	98.2	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67
5.2	98.2	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
5.2	98.2	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
5.1	98.1	GSM147724	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	53

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	2e-59	226	1622099_at	CA811184	-	-	4e+0	At4g00165	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.13	2e-59	226	1609656_s_at	CA810365	-	-	4e+0	At4g00165	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.50	7e-50	194	1613670_at	CB339429	-	-	5e-1	At1g14315	-	C.G.	S.X.	Please select
0.56	3e-46	182	1619821_at	CB343526	-	-	7e+0	At4g12005	unknown protein	C.G.	S.X.	Please select
0.46	2e-44	176	1612760_at	CB345257	-	-	2e+0	At4g02160	unknown protein	C.G.	S.X.	Please select
0.33	4e-39	159	1613028_at	CB344296	-	-	4e+0	At1g49260	-	C.G.	S.X.	Please select
0.52	2e-34	143	1617639_at	CB345213	-	-	2e+0	At1g08810	MYB60 (myb domain protein 60)	C.G.	S.X.	Please select
0.47	8e-31	131	1618320_at	CB340841	-	-	8e+0	At3g51010	unknown protein	C.G.	S.X.	Please select
0.32	3e-27	119	1607782_x_at	CF205986.1	-	-	1e+1	At5g59860	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+1	28	Arabidopsis thaliana	Atcg01250	-	-	NADH dehydrogenase ND2	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.59	1e-48	192	Glycine max	GmaAffx.89425.1.A1_s_at	CK606255	-	-	4e-1	At5g05110	cysteine protease inhibitor, putative / cystatin, putative	C.G.	S.X.	Please select
0.39	5e-30	129	Hordeum vulgare	HVSMEc0009D22f_at	HVSMEc0009D22f	-	-	5e+0	Atmg00240	-	C.G.	S.X.	Please select
0.19	4e-49	194	Oryza sativa	Os.28409.4.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	3e-52	204	Populus trichocarpa	PtpAffx.250004.1.S1_at	13936324-1	-	-	1e+0	At2g32785	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.27	2e-40	165	Triticum aestivum	TaAffx.128418.117.S1_at	CA699216	-	-	3e-1	At2g34690	ACD11 (ACCELERATED CELL DEATH 11)	C.G.	S.X.	Please select
0.08	6e-48	188	Zea mays	ZmAffx.1221.1.S1_at	11990232-113	-	-	1e+0	At1g07140	SIRANBP	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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