CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1607848_at

Gene name hypothetical protein LOC100248102

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 77.3 1607848_at CB339435 hypothetical protein LOC100248102 - 1e+0 At4g29530 2,3-diketo-5-methylthio-1-phosphopentane phosphatase family S.X. H.G.
0.44 64.1 1621517_s_at CF204966.1 hypothetical protein LOC100250066 - 2e-2 At1g62760 invertase/pectin methylesterase inhibitor family protein S.X. H.G.
0.29 37.7 1620413_at CF373042 - - 1e+0 At1g62510 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.15 15.6 1615714_at CF201075.1 - - 3e-4 At1g07250 UGT71C4 (UDP-GLUCOSYL TRANSFERASE 71C4) S.X. H.G.
0.14 14.4 1614117_at CF200679.1 - - 4e-4 At1g61890 MATE efflux family protein S.X. H.G.
0.07 7.8 1615548_at CA809748 - - 2e-2 At5g26805 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.8 99.9 GSM322366 genotype: Chardonnay - disease type: Healthy - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
13.3 99.8 GSM322365 genotype: Chardonnay - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
12.8 99.8 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
11.4 99.7 GSM322370 genotype: Incrocio Manzoni - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
10.6 99.7 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.6 99.5 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.7 99.3 GSM147742 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 71
7.0 99.1 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.6 98.9 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
6.2 98.8 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-3 42 1613562_at CF210939 hypothetical protein LOC100247400 - 3e-2 At1g73010 phosphatase C.G. S.X.
0.02 8e-2 36 1616825_at CF214279 hypothetical protein LOC100250203 - 2e-41 At1g07230 hydrolase, acting on ester bonds C.G. S.X.
0.03 3e-1 34 1610855_at CA814092 hypothetical protein LOC100250925 - 9e-27 At5g51220 ubiquinol-cytochrome C chaperone family protein C.G. S.X.
0.03 5e+0 30 1619524_at CF517397 - - 6e-2 At5g13240 transcription regulator C.G. S.X.
0.02 5e+0 30 1618797_at CB973441 hypothetical protein LOC100263614 - 9e+0 At5g47630 mtACP3 (mitochondrial acyl carrier protein 3) C.G. S.X.
0.03 5e+0 30 1617803_s_at CB002166 - - 2e-48 At1g68010 HPR C.G. S.X.
0.01 5e+0 30 1617382_s_at BQ799139 hypothetical protein LOC100262344 - 6e-174 At1g68010 HPR C.G. S.X.
0.03 5e+0 30 1614365_at CF210448 hypothetical protein LOC100266203 - 2e-36 At3g25800 PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) C.G. S.X.
0.01 5e+0 30 1610591_at CB923320 hypothetical protein LOC100251627 - 1e-5 At2g46370 JAR1 (JASMONATE RESISTANT 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e+0 34 Arabidopsis thaliana At4g29530 829074 2,3-diketo-5-methylthio-1-phosphopentane phosphatase family F:phosphatase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;MPOBF - - - C.G. S.X.
0.09 6e-6 52 Glycine max Gma.1359.1.S1_at BQ273371 - - 7e-2 At1g48605 ATHAL3B C.G. S.X.
0.03 5e-1 34 Hordeum vulgare HVSMEg0005K08r2_at HVSMEg0005K08r2 - - 1e+0 At5g57685 AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3) C.G. S.X.
0.03 8e+0 32 Oryza sativa OsAffx.8071.1.A1_at - - - 0 C.G. S.X.
0.05 4e-1 36 Populus trichocarpa PtpAffx.221756.1.S1_at pmrna38800 hypothetical protein - 4e-1 At3g23830 GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4) C.G. S.X.
0.04 3e-1 36 Triticum aestivum TaAffx.52833.1.S1_s_at CA700269 - - 2e-1 At5g27410 aminotransferase class IV family protein C.G. S.X.
0.03 4e-1 34 Zea mays Zm.18756.1.A1_at CO524208 hypothetical protein LOC100280138 - 1e+0 At3g54890 LHCA1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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