Gene omics information

Query gene ID	1607816_at
Gene name	hypothetical protein LOC100248686
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1607816_at	CF216068	hypothetical protein LOC100248686	-	1e-28	At4g22130	SRF8 (STRUBBELIG-RECEPTOR FAMILY 8)	S.X.	H.G.	Please select
0.65	85.0	1610048_at	CF403624	hypothetical protein LOC100258703	-	3e-4	At5g37310	-	S.X.	H.G.	Please select
0.51	73.2	1617357_at	CB921493	hypothetical protein LOC100263238	-	3e-25	At5g57410	unknown protein	S.X.	H.G.	Please select
0.49	69.3	1609398_at	CF413640	hypothetical protein LOC100261736	-	3e-66	At5g23860	TUB8	S.X.	H.G.	Please select
0.48	68.8	1609772_at	CF511919	hypothetical protein LOC100246247	-	3e-1	At3g56880	VQ motif-containing protein	S.X.	H.G.	Please select
0.46	66.5	1613050_at	CB971087	hypothetical protein LOC100248215	-	5e-4	At1g20470	auxin-responsive family protein	S.X.	H.G.	Please select
0.46	66.5	1618244_s_at	CF404277	hypothetical protein LOC100253823	-	1e-9	At3g57780	-	S.X.	H.G.	Please select
0.45	64.6	1617851_s_at	CF404370	hypothetical protein LOC100266313	-	1e+0	At4g36740	ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)	S.X.	H.G.	Please select
0.44	64.1	1611716_at	CF513400	hypothetical protein LOC100255395	-	5e-7	At2g38010	ceramidase family protein	S.X.	H.G.	Please select
0.44	64.1	1606978_s_at	CF207835	hypothetical protein LOC100242245	-	5e-1	At1g16680	DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.6	96.0	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436357	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436353	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436361	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436356	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436374	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436352	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e-10	65	1619614_at	CF372273	hypothetical protein LOC100249831	-	2e-36	At3g14350	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	C.G.	S.X.	Please select
0.04	2e-3	42	1607952_at	CF372631	hypothetical protein LOC100250523	-	3e-8	At1g28440	HSL1 (HAESA-Like 1)	C.G.	S.X.	Please select
0.09	7e-3	40	1611562_at	CF211645	hypothetical protein LOC100247008	-	2e-1	At4g03390	SRF3 (STRUBBELIG-RECEPTOR FAMILY 3)	C.G.	S.X.	Please select
0.02	7e-3	40	1607524_at	CF372095	similar to receptor-like protein kinase 2	-	2e-19	At5g65700	BAM1 (BARELY ANY MERISTEM 1)	C.G.	S.X.	Please select
0.03	3e-2	38	1610364_at	BM437363	hypothetical protein LOC100256105	-	4e-10	At5g15080	protein kinase, putative	C.G.	S.X.	Please select
0.03	3e-2	38	1606567_at	BM437363	-	-	4e-10	At5g15080	protein kinase, putative	C.G.	S.X.	Please select
0.06	1e-1	36	1615495_at	CB978751	hypothetical protein LOC100246196	-	2e-5	At5g35580	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	C.G.	S.X.	Please select
0.02	1e-1	36	1610507_at	BQ798066	hypothetical protein LOC100247393	-	6e-19	At5g58590	RANBP1 (RAN BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.02	4e-1	34	1622783_s_at	CF202918.1	hypothetical protein LOC100247393	-	4e-7	At5g58590	RANBP1 (RAN BINDING PROTEIN 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	1e-28	127	Arabidopsis thaliana	At4g22130	828302	SRF8 (STRUBBELIG-RECEPTOR FAMILY 8)	F:in 6 functions;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.42	3e-82	305	Glycine max	GmaAffx.36693.1.S1_at	BG881453	-	-	2e-70	At4g22130	SRF8 (STRUBBELIG-RECEPTOR FAMILY 8)	C.G.	S.X.	Please select
0.17	6e-32	137	Hordeum vulgare	Contig6843_at	Contig6843	-	-	2e-32	At4g22130	SRF8 (STRUBBELIG-RECEPTOR FAMILY 8)	C.G.	S.X.	Please select
0.12	1e-30	135	Oryza sativa	Os02g0190500	AK111710.1	-	Leucine-rich repeat transmembrane protein kinase 2	2e-18	At4g22130	SRF8 (STRUBBELIG-RECEPTOR FAMILY 8)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.34	1e-100	367	Populus trichocarpa	PtpAffx.209626.1.S1_at	pmrna19021	hypothetical protein	-	3e-113	At4g22130	SRF8 (STRUBBELIG-RECEPTOR FAMILY 8)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.23	8e-24	111	Triticum aestivum	Ta.27027.1.A1_at	BT008918.1	-	-	9e-34	At4g22130	SRF8 (STRUBBELIG-RECEPTOR FAMILY 8)	C.G.	S.X.	Please select
0.08	2e-10	65	Zea mays	Zm.11939.1.A1_at	CF624620	-	-	7e-21	At3g14350	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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