Gene omics information

Query gene ID	1607788_at
Gene name	hypothetical protein LOC100254226
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	90.8	1607788_at	CA815954	hypothetical protein LOC100254226	-	7e-19	At5g11270	OCP3 (OVEREXPRESSOR OF CATIONIC PEROXIDASE 3)	S.X.	H.G.	Please select
0.46	66.5	1614742_at	CD004009	hypothetical protein LOC100255475	-	7e-68	At2g19940	N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization	S.X.	H.G.	Please select
0.44	64.1	1619046_at	CF207757	similar to catalytic	-	9e-24	At3g24180	catalytic/ glucosylceramidase	S.X.	H.G.	Please select
0.33	45.7	1614197_at	CD721411	similar to catalytic	-	2e-55	At3g24180	catalytic/ glucosylceramidase	S.X.	H.G.	Please select
0.14	14.4	1614929_at	CF405149	hypothetical protein LOC100255901	-	5e-1	At1g05970	unknown protein	S.X.	H.G.	Please select
0.06	6.8	1610574_at	CF510554	hypothetical protein LOC100264544	-	4e-38	At4g33090	APM1 (AMINOPEPTIDASE M1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.1	98.1	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.7	97.7	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.7	96.2	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.7	96.2	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436406	V. riparia (VR, PI588259) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.92	0	1231	1611484_at	CA817872	-	-	7e-19	At5g11270	OCP3 (OVEREXPRESSOR OF CATIONIC PEROXIDASE 3)	C.G.	S.X.	Please select
0.02	2e-1	36	1621983_s_at	CF405068	hypothetical protein LOC100245224	-	3e-1	At4g27480	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	C.G.	S.X.	Please select
0.02	2e-1	36	1616043_at	CF405068	hypothetical protein LOC100245224	-	3e-1	At4g27480	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	C.G.	S.X.	Please select
0.02	3e+0	32	1620524_at	CB970909	hypothetical protein LOC100251822	-	9e-2	At1g13195	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	3e+0	32	1620500_at	CB349662	hypothetical protein LOC100256536	-	1e-3	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	C.G.	S.X.	Please select
0.02	3e+0	32	1619843_at	CB002142	-	-	1e+0	At4g38060	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	1619640_at	CB340750	-	-	4e+0	At4g01220	-	C.G.	S.X.	Please select
0.01	3e+0	32	1619595_at	CF207822	hypothetical protein LOC100256839	-	4e-39	At4g04040	MEE51 (maternal effect embryo arrest 51)	C.G.	S.X.	Please select
0.02	3e+0	32	1619206_at	CF510574	hypothetical protein LOC100242839	-	6e+0	At5g22440	60S ribosomal protein L10A (RPL10aC)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	7e-19	95	Arabidopsis thaliana	At5g11270	830997	OCP3 (OVEREXPRESSOR OF CATIONIC PEROXIDASE 3)	Encodes a homeodomain transcription factor involved in mediating resistance to infection by necrotrophic pathogens dependent on perception of jasmonic acid through COI1. Expressed in the nucleus. Downregulated upon fungal infection. Also involved in drought tolerance.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	8e-1	36	Glycine max	GmaAffx.75107.1.A1_at	CD410272	-	-	7e-1	At5g37240	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Hordeum vulgare	rbaal1i09_at	rbaal1i09	-	-	8e-1	At4g27900	-	C.G.	S.X.	Please select
0.04	1e-3	46	Oryza sativa	Os06g0601000	AK071330.1	-	Homeodomain-like containing protein	4e-2	At3g59940	kelch repeat-containing F-box family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	5e-33	143	Populus trichocarpa	PtpAffx.66608.1.S1_at	DN491616	hypothetical protein	-	6e-10	At5g11270	OCP3 (OVEREXPRESSOR OF CATIONIC PEROXIDASE 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	6e-1	36	Triticum aestivum	TaAffx.9484.1.S1_at	CA597224	-	-	7e-2	At1g33520	MOS2 (modifier of snc1, 2)	C.G.	S.X.	Please select
0.02	1e+0	34	Zea mays	ZmAffx.1333.1.S1_s_at	11990232-81	-	-	5e-50	Atcg01120	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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