Gene omics information

Query gene ID	1607707_at
Gene name	hypothetical protein LOC100260840
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1607707_at	CB341307	hypothetical protein LOC100260840	-	4e+0	At5g05380	PRA1.B3 (PRENYLATED RAB ACCEPTOR 1.B3)	S.X.	H.G.	Please select
0.67	87.9	1620660_at	CF517134	hypothetical protein LOC100259089	-	6e-10	At5g07020	proline-rich family protein	S.X.	H.G.	Please select
0.60	81.9	1608853_at	CF515334	similar to chloroplast post-illumination chlorophyll fluorescence increase protein	-	4e-39	At3g15840	PIFI (post-illumination chlorophyll fluorescence increase)	S.X.	H.G.	Please select
0.44	64.1	1611983_at	BM437296	hypothetical protein LOC100244472	-	2e-3	At4g00030	plastid-lipid associated protein PAP / fibrillin family protein	S.X.	H.G.	Please select
0.29	37.7	1608824_at	CF589271	hypothetical protein LOC100250549	-	1e-15	At1g32520	unknown protein	S.X.	H.G.	Please select
0.18	19.4	1617311_at	CB344329	hypothetical protein LOC100257045	-	1e-16	At4g24770	RBP31 (31-KDA RNA BINDING PROTEIN)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.3	99.8	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28
13.0	99.8	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16
10.2	99.6	GSM147705	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	34
10.2	99.6	GSM147681	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	10
8.0	99.3	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
7.6	99.3	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
7.5	99.2	GSM147692	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	21
7.1	99.1	GSM147698	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	27
6.3	98.8	GSM147686	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	15
6.0	98.7	GSM147674	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	3

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-3	40	1620687_at	CF516986	hypothetical protein LOC100256294	-	1e-7	At5g03660	unknown protein	C.G.	S.X.	Please select
0.04	8e-2	36	1614919_at	CF515942	-	-	1e+0	At4g12970	unknown protein	C.G.	S.X.	Please select
0.04	8e-2	36	1613762_at	CF404411	hypothetical protein LOC100256306	-	5e-3	At2g04880	ZAP1 (ZINC-DEPENDENT ACTIVATOR PROTEIN-1)	C.G.	S.X.	Please select
0.02	3e-1	34	1613438_at	CB835999	-	-	5e-1	At5g55430	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	34	1612063_at	CB002186	-	-	3e+0	At1g77830	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	3e-1	34	1609657_at	CB835999	-	-	5e-1	At5g55430	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	34	1608280_at	CB002186	-	-	3e+0	At1g77830	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	1e+0	32	1621076_at	CF207338	hypothetical protein LOC100257150	-	6e-16	At1g74050	60S ribosomal protein L6 (RPL6C)	C.G.	S.X.	Please select
0.01	1e+0	32	1620740_s_at	BQ796880	hypothetical protein LOC100250299	-	5e-36	At5g66680	DGL1	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At5g05380	830420	PRA1.B3 (PRENYLATED RAB ACCEPTOR 1.B3)	F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	2e-12	73	Glycine max	Gma.8109.1.A1_at	CD405677	-	-	5e+0	At5g38540	jacalin lectin family protein	C.G.	S.X.	Please select
0.10	1e-4	46	Hordeum vulgare	Contig22558_at	Contig22558	-	-	4e-2	At1g28100	unknown protein	C.G.	S.X.	Please select
0.04	1e-4	48	Oryza sativa	Os10g0499600	AK100791.1	-	Conserved hypothetical protein	5e-2	At1g28100	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	4e-1	36	Populus trichocarpa	PtpAffx.145296.1.A1_a_at	BP935032	hypothetical protein	-	4e+0	At4g18860	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e+0	32	Triticum aestivum	Ta.650.1.A1_at	BG906842	-	-	1e+1	At5g28630	glycine-rich protein	C.G.	S.X.	Please select
0.04	7e-3	40	Zea mays	Zm.10111.1.A1_at	BM380307	hypothetical protein LOC100217307	-	9e+0	At4g30180	transcription factor/ transcription regulator	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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