Gene omics information

Query gene ID	1607681_at
Gene name	hypothetical protein LOC100257925
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	90.8	1607681_at	CD802479	hypothetical protein LOC100257925	-	5e-28	At5g43370	APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1)	S.X.	H.G.	Please select
0.67	87.9	1616083_at	CB009608	hypothetical protein LOC100263644	-	6e-39	At1g11260	STP1 (SUGAR TRANSPORTER 1)	S.X.	H.G.	Please select
0.44	64.1	1619161_at	CD802334	hypothetical protein LOC100262369	-	4e-3	At3g15300	VQ motif-containing protein	S.X.	H.G.	Please select
0.29	37.7	1613324_at	CB971883	hypothetical protein LOC100246997	-	4e-54	At1g53440	leucine-rich repeat family protein / protein kinase family protein	S.X.	H.G.	Please select
0.21	24.0	1617153_at	CF516521	hypothetical protein LOC100260369	-	2e+0	At2g32360	ubiquitin family protein	S.X.	H.G.	Please select
0.10	10.3	1615362_s_at	BQ799459	hypothetical protein LOC100260441	-	3e-27	At4g01370	ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.1	98.1	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
4.8	97.8	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
4.5	97.5	GSM147681	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	10
4.5	97.5	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
4.3	97.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
4.0	96.7	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
3.9	96.6	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
3.7	96.2	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
3.6	96.0	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
3.5	95.7	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	4e-13	73	1609955_at	CA810705	hypothetical protein LOC100267740	-	8e-2	At1g73790	unknown protein	C.G.	S.X.	Please select
0.06	2e-12	71	1620522_at	CA809321	hypothetical protein LOC100257595	-	5e+0	At3g04280	ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22)	C.G.	S.X.	Please select
0.06	2e-12	71	1619346_at	BQ798913	hypothetical protein LOC100255325	-	3e-4	At3g44750	HDA3 (HISTONE DEACETYLASE 3)	C.G.	S.X.	Please select
0.05	2e-12	71	1618171_s_at	BQ792407	zeaxanthin epoxidase	-	3e-1	At5g65080	MAF5 (MADS AFFECTING FLOWERING 5)	C.G.	S.X.	Please select
0.07	2e-12	71	1614133_at	CD711415	hypothetical protein LOC100255873	-	5e-2	At1g43800	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	C.G.	S.X.	Please select
0.05	2e-12	71	1614012_at	CF415366	hypothetical protein LOC100254260	-	3e-1	At5g54980	integral membrane family protein	C.G.	S.X.	Please select
0.07	2e-12	71	1610333_at	CD711415	-	-	5e-2	At1g43800	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	C.G.	S.X.	Please select
0.04	2e-12	71	1608043_at	CD802249	hypothetical protein LOC100251928	-	2e-16	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	C.G.	S.X.	Please select
0.05	2e-12	71	1606913_at	BQ792407	zeaxanthin epoxidase	-	3e-1	At5g65080	MAF5 (MADS AFFECTING FLOWERING 5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	5e-28	125	Arabidopsis thaliana	At5g43370	834355	APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1)	phosphate transporter	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	4e-35	149	Glycine max	Gma.3262.1.S1_at	AI960141	-	-	4e-11	At3g54700	carbohydrate transmembrane transporter/ phosphate transmembrane transporter/ sugar:hydrogen symporter	C.G.	S.X.	Please select
0.07	2e-4	46	Hordeum vulgare	HC108A06_SK_at	HC108A06_SK	-	-	8e-1	At5g58280	transcriptional factor B3 family protein	C.G.	S.X.	Please select
0.09	2e-1	38	Oryza sativa	Os.46784.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.30	2e-24	113	Populus trichocarpa	PtpAffx.69535.1.A1_s_at	CV254601	high affinity inorganic phosphate transporter	-	8e-37	At2g38940	ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	1e-6	54	Triticum aestivum	Ta.18863.1.S1_a_at	CA607963	-	-	2e-6	At5g43360	PHT3 (PHOSPHATE TRANSPORTER 3)	C.G.	S.X.	Please select
0.05	6e-7	54	Zea mays	Zm.6913.2.A1_a_at	AI065646	-	-	9e-1	At2g16060	AHB1 (ARABIDOPSIS HEMOGLOBIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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