Gene omics information

Query gene ID	1607665_a_at
Gene name	hypothetical protein LOC100265617
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	83.2	1607665_a_at	CB978733	hypothetical protein LOC100265617	-	1e-47	At3g55005	TON1B (tonneau 1b)	S.X.	H.G.	Please select
0.71	89.5	1612563_s_at	CF202478.1	hypothetical protein LOC100242819	-	3e-3	At3g50550	unknown protein	S.X.	H.G.	Please select
0.67	87.9	1608869_s_at	CF514065	glyceraldehyde-3-phosphate dehydrogenase	-	4e-41	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	S.X.	H.G.	Please select
0.61	83.2	1617329_at	BQ798056	hypothetical protein LOC100255368	-	5e-49	At3g19760	eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative	S.X.	H.G.	Please select
0.60	81.9	1616601_at	CF210956	hypothetical protein LOC100256416	-	9e-9	At3g26420	ATRZ-1A	S.X.	H.G.	Please select
0.33	45.7	1612924_s_at	CD798445	hypothetical protein LOC100240752	-	2e-22	At4g14800	PBD2 (20S PROTEASOME BETA SUBUNIT 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.7	93.0	GSM436401	V. riparia (VR, PI588259) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436403	V. riparia (VR, PI588259) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436402	V. riparia (VR, PI588259) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436400	V. riparia (VR, PI588259) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	36	1622406_at	CB343386	similar to LTA2 (PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE); dihydrolipoyllysine-residue acetyltransferase	-	5e-47	At3g25860	LTA2	C.G.	S.X.	Please select
0.02	2e+0	32	1620244_at	CD720153	-	-	2e-136	Atcg01250	-	C.G.	S.X.	Please select
0.02	2e+0	32	1618126_at	CF213298	hypothetical protein LOC100261549	-	3e-8	At1g76660	-	C.G.	S.X.	Please select
0.02	2e+0	32	1616235_s_at	CA813043	hypothetical protein LOC100240921	-	4e-9	At2g04845	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1616198_at	CF405950	hypothetical protein LOC100242144	-	1e-7	At1g28370	ERF11 (ERF DOMAIN PROTEIN 11)	C.G.	S.X.	Please select
0.02	2e+0	32	1612786_at	CB977888	hypothetical protein LOC100252486	-	5e-7	At5g11490	adaptin family protein	C.G.	S.X.	Please select
0.01	2e+0	32	1611503_s_at	CB969228	hypothetical protein LOC100241657	-	4e-6	At5g10930	CIPK5 (CBL-INTERACTING PROTEIN KINASE 5)	C.G.	S.X.	Please select
0.02	2e+0	32	1611087_at	CB339392	hypothetical protein LOC100240921	-	8e-15	At2g04845	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please select
0.01	2e+0	32	1608263_a_at	BQ794795	alcohol dehydrogenase 7	-	8e-35	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	1e-47	190	Arabidopsis thaliana	At3g55005	824666	TON1B (tonneau 1b)	Encodes a protein of unknown function that is involved in cortical microtubule organization. Mutants exhibit abnormal cell growth and patterns of division. TON1B appears to be redundant with TON1A. Encodes a novel protein that is similar to human FOP and OFD1 centrosomal proteins. Localizes to the preprophase band, cytoplasm and cell cortex where it is probably associated with the cortical cytoskeleton. TON1B associates with plant centrin CEN1.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.33	4e-24	113	Glycine max	Gma.9858.1.S1_at	CD417339	-	-	2e-13	At3g55005	TON1B (tonneau 1b)	C.G.	S.X.	Please select
0.07	5e-24	111	Hordeum vulgare	Contig7890_at	Contig7890	-	-	4e-5	At3g55000	TON1A (TONNEAU 1)	C.G.	S.X.	Please select
0.09	5e-27	123	Oryza sativa	Os11g0102600	AF280060.1	-	Lissencephaly type-1-like homology motif domaincontaining protein	5e-14	At3g55000	TON1A (TONNEAU 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.35	1e-60	234	Populus trichocarpa	PtpAffx.22156.3.A1_a_at	CV247973	hypothetical protein	-	7e-25	At3g55005	TON1B (tonneau 1b)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.13	1e-17	91	Triticum aestivum	TaAffx.113238.1.S1_at	CA617029	-	-	1e-9	At3g55005	TON1B (tonneau 1b)	C.G.	S.X.	Please select
0.09	4e-21	101	Zea mays	Zm.10787.1.A1_at	CF625193	hypothetical protein LOC100274116	-	2e-13	At3g55000	TON1A (TONNEAU 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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