CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1607611_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 72.7 1607611_at CF202357.1 - - 3e-8 At3g13224 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.80 93.6 1612659_at CF204873.1 - - 5e-62 At4g28390 AAC3 (ADP/ATP CARRIER 3) S.X. H.G.
0.67 87.9 1609018_at CF204139.1 - - 1e+0 At3g44580 unknown protein S.X. H.G.
0.67 87.9 1611884_at CF569214.1 - - 1e+0 At4g29960 unknown protein S.X. H.G.
0.55 77.3 1621749_x_at CF569214.1 - - 1e+0 At4g29960 unknown protein S.X. H.G.
0.38 53.6 1611129_s_at CB005644 hypothetical protein LOC100261235 - 2e+0 At2g06200 AtGRF6 (GROWTH-REGULATING FACTOR 6) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.2 99.1 GSM147739 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 68
6.8 99.0 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
6.4 98.9 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
6.3 98.8 GSM147723 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 52
5.7 98.5 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
5.6 98.4 GSM147729 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 58
5.6 98.4 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
5.4 98.3 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
5.2 98.2 GSM147727 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 56
5.1 98.1 GSM147720 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 49
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.63 0 1370 1621900_s_at CD798424 hypothetical protein LOC100246013 - 3e-49 At3g13224 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.55 2e-135 480 1617424_at BM438118 hypothetical protein LOC100265210 - 2e-9 At3g13224 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.03 7e-3 40 1606767_at CB342661 - - 5e+0 At5g20430 mob1/phocein family protein C.G. S.X.
0.02 1e-1 36 1620309_at CF203578.1 - - 4e-1 At2g02300 AtPP2-B5 (Phloem protein 2-B5) C.G. S.X.
0.02 4e-1 34 1616928_at CB005657 - - 5e-4 At4g03960 tyrosine specific protein phosphatase family protein C.G. S.X.
0.02 4e-1 34 1613105_at CB002608 - - 2e+0 At5g19490 DNA binding / sequence-specific DNA binding C.G. S.X.
0.02 4e-1 34 1613079_at CB005657 hypothetical protein LOC100256357 - 5e-4 At4g03960 tyrosine specific protein phosphatase family protein C.G. S.X.
0.03 4e-1 34 1610409_at CF513011 hypothetical protein LOC100262258 - 2e-75 At1g20920 DEAD box RNA helicase, putative C.G. S.X.
0.02 4e-1 34 1609311_at CB002608 hypothetical protein LOC100255768 - 2e+0 At5g19490 DNA binding / sequence-specific DNA binding C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-8 59 Arabidopsis thaliana At3g13224 820515 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBA - - - C.G. S.X.
0.06 6e-7 56 Glycine max Gma.6585.1.S1_at CD403098 - - 5e-3 At1g69690 TCP family transcription factor, putative C.G. S.X.
0.02 7e-1 34 Hordeum vulgare Contig8030_at Contig8030 - - 5e+0 At5g45573 unknown protein C.G. S.X.
0.03 5e-2 40 Oryza sativa Os10g0450900 AK064065.1 - Glycine-rich cell wall structural protein 2precursor 2e+0 At3g23140 zinc finger (C2H2 type) family protein C.G. S.X.
0.31 5e-26 119 Populus trichocarpa PtpAffx.60130.1.S1_at DN495929 hypothetical protein - 1e-10 At3g13224 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.03 6e+0 32 Triticum aestivum TaAffx.29434.1.S1_at CA642975 - - 2e+1 At5g38950 germin-like protein-related C.G. S.X.
0.03 3e+0 32 Zea mays ZmAffx.563.1.A1_at AI714606 - - 3e+0 At5g67560 ATARLA1D (ADP-ribosylation factor-like A1D) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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