Gene omics information

Query gene ID	1607582_at
Gene name	hypothetical protein LOC100260114
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	93.6	1607582_at	CB349344	hypothetical protein LOC100260114	-	1e+0	At2g23660	LBD10 (LOB DOMAIN-CONTAINING PROTEIN 10)	S.X.	H.G.	Please select
0.67	87.9	1609735_at	CF372575	hypothetical protein LOC100249713	-	1e-75	At1g50030	TOR (TARGET OF RAPAMYCIN)	S.X.	H.G.	Please select
0.63	84.3	1612962_at	BQ794726	-	-	2e-2	At5g35530	40S ribosomal protein S3 (RPS3C)	S.X.	H.G.	Please select
0.55	77.3	1614010_at	CF518977	hypothetical LOC100246762	-	4e+0	At1g60390	BURP domain-containing protein / polygalacturonase, putative	S.X.	H.G.	Please select
0.44	64.1	1612660_at	CB980017	hypothetical protein LOC100244096	-	1e-39	At1g20960	emb1507 (embryo defective 1507)	S.X.	H.G.	Please select
0.23	27.5	1611458_at	CF207715	hypothetical protein LOC100243644	-	2e-18	At2g35530	bZIP transcription factor family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.2	94.9	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436365	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436375	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	34	1609861_at	BQ792428	hypothetical protein LOC100246739	-	6e+0	At5g02640	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	1617414_at	CF204226.1	-	-	1e-18	At5g25560	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.04	1e+0	32	1615183_at	CD800228	hypothetical protein LOC100246016	-	7e-15	At1g05360	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	32	1613148_at	CF405654	hypothetical protein LOC100246519	-	1e+0	At5g38720	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	1607069_at	CB982496	hypothetical protein LOC100256938	-	2e+0	At3g58150	-	C.G.	S.X.	Please select
0.02	5e+0	30	1621546_at	CF204967.1	hypothetical protein LOC100263158	-	6e-6	At4g10710	SPT16 (global transcription factor C)	C.G.	S.X.	Please select
0.02	5e+0	30	1620179_at	CB912064	hypothetical protein LOC100241542 /// hypothetical protein LOC100261171	-	1e-53	At4g13020	MHK	C.G.	S.X.	Please select
0.03	5e+0	30	1618789_at	CB981489	hypothetical protein LOC100257710	-	4e+0	At5g42330	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	1618403_at	CF517333	-	-	2e-1	At3g62880	ATOEP16-4	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At2g23660	816897	LBD10 (LOB DOMAIN-CONTAINING PROTEIN 10)	F:unknown;P:biological_process unknown;C:unknown;PMBOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e+0	34	Glycine max	GmaAffx.7134.1.S1_at	BI970443	-	-	5e+0	At4g03160	-	C.G.	S.X.	Please select
0.04	7e+0	30	Hordeum vulgare	HA26J11r_at	HA26J11r	-	-	6e+0	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	C.G.	S.X.	Please select
0.03	1e-1	38	Oryza sativa	Os08g0288500	CB662629	-	D111/G-patch domain containing protein	7e-1	At3g20590	non-race specific disease resistance protein, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	5e+0	32	Populus trichocarpa	PtpAffx.214512.1.S1_at	pmrna28223	hypothetical protein	-	7e-6	At5g35080	protein binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	4e+0	32	Triticum aestivum	Ta.5989.2.S1_a_at	BJ253883	-	-	1e+0	At2g47020	peptide chain release factor, putative	C.G.	S.X.	Please select
0.08	4e-7	54	Zea mays	Zm.4433.1.A1_at	AY108076.1	-	-	4e-2	At3g09850	D111/G-patch domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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