Gene omics information

Query gene ID	1607580_s_at
Gene name	similar to histone H3 /// similar to histone H3
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	77.3	1607580_s_at	AF501624.1	similar to histone H3 /// similar to histone H3	-	6e-87	At4g40040	histone H3.2	S.X.	H.G.	Please select
0.80	93.6	1610728_at	CA808724	-	-	1e-180	Atcg00800	-	S.X.	H.G.	Please select
0.67	87.9	AFFX-r2-P1-cre-3_at	AFFX-r2-P1-cre-3	-	-	0			S.X.	H.G.	Please select
0.53	75.2	AFFX-Vvi-X03453-2_s_at	-	-	-	0			S.X.	H.G.	Please select
0.50	72.7	AFFX-CreX-3_at	AFFX-CreX-3	-	-	0			S.X.	H.G.	Please select
0.13	13.3	1607924_at	CB971581	hypothetical protein LOC100261557	-	3e-11	At4g16580	catalytic	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
1.9	87.2	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436393	V. riparia (VR, PI588259) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.58	0	975	1608891_at	CF201205.1	-	-	3e-72	At4g40040	histone H3.2	C.G.	S.X.	Please select
0.32	1e-54	212	1618914_at	CB972369	-	-	9e-55	At5g10400	histone H3	C.G.	S.X.	Please select
0.11	3e-52	204	1622722_at	CF209124	-	-	4e-1	At4g30067	LCR63 (Low-molecular-weight cysteine-rich 63)	C.G.	S.X.	Please select
0.11	3e-52	204	1618583_s_at	CF607489	-	-	6e+0	At5g64900	PROPEP1	C.G.	S.X.	Please select
0.10	3e-52	204	1611432_at	BM437627	hypothetical protein LOC100265313	-	3e-5	At5g54490	PBP1 (PINOID-BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.11	8e-50	196	1616533_at	CB339497	hypothetical protein LOC100250997	-	6e-7	At4g32260	ATP synthase family	C.G.	S.X.	Please select
0.07	1e-48	192	1613587_at	CF213486	hypothetical protein LOC100259893	-	1e-33	At5g57330	aldose 1-epimerase family protein	C.G.	S.X.	Please select
0.35	1e-42	173	1612573_at	CF415684	similar to predicted protein	-	4e-65	At5g10400	histone H3	C.G.	S.X.	Please select
0.33	1e-36	153	1612713_at	BQ797805	similar to histone H3	-	3e-57	At5g10980	histone H3	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.43	6e-87	321	Arabidopsis thaliana	At4g40040	830165	histone H3.2	F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.37	1e-36	155	Glycine max	PsAffx.C1000261_at	PsAffx.C1000261	-	-	1e-15	At5g10980	histone H3	C.G.	S.X.	Please select
0.34	9e-26	117	Hordeum vulgare	Contig570_s_at	Contig570	-	-	3e-23	At1g09200	histone H3	C.G.	S.X.	Please select
0.36	3e-90	333	Oryza sativa	Os03g0390600	AF467728.1	-	Histone H3.3	5e-105	At4g40040	histone H3.2	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.38	3e-68	260	Populus trichocarpa	PtpAffx.18340.1.S1_at	CV263209	histone H3	-	8e-39	At5g10400	histone H3	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.34	1e-29	131	Triticum aestivum	TaAffx.113263.6.S1_at	BE213282	-	-	3e-26	At1g09200	histone H3	C.G.	S.X.	Please select
0.33	2e-100	365	Zea mays	Zm.14352.2.S1_at	AY104356.1	hypothetical protein LOC100192746	-	5e-93	At4g40040	histone H3.2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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