Gene omics information

Query gene ID	1607563_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	84.3	1607563_at	CF203757.1	-	-	7e-49	At5g61510	NADP-dependent oxidoreductase, putative	S.X.	H.G.	Please select
0.57	79.8	1617825_s_at	CF205420.1	-	-	3e-23	At1g15880	GOS11 (golgi snare 11)	S.X.	H.G.	Please select
0.50	72.7	1617220_at	CK138141.1	-	-	1e-9	At1g65350	UBQ13	S.X.	H.G.	Please select
0.50	72.7	1621390_at	CF201671.1	hypothetical LOC100243032	-	3e+0	At2g33450	50S ribosomal protein L28, chloroplast (CL28)	S.X.	H.G.	Please select
0.44	64.1	1619472_x_at	CK138141.1	-	-	1e-9	At1g65350	UBQ13	S.X.	H.G.	Please select
0.43	61.5	1621710_at	CF201680.1	-	-	3e-1	At1g59690	-	S.X.	H.G.	Please select
0.27	34.0	1613156_at	CF209286	hypothetical protein LOC100247989	-	6e-5	At1g53400	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.5	97.5	GSM436415	V. riparia (VR, PI588259) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.3	97.2	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.2	97.1	GSM436399	V. riparia (VR, PI588259) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436410	V. riparia (VR, PI588259) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436398	V. riparia (VR, PI588259) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
3.0	94.2	GSM436402	V. riparia (VR, PI588259) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436420	V. riparia (VR, PI588259) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436401	V. riparia (VR, PI588259) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	0	732	1620754_at	CF209634	hypothetical protein LOC100247307	-	7e-8	At5g61510	NADP-dependent oxidoreductase, putative	C.G.	S.X.	Please select
0.67	0	732	1620044_s_at	CF209634	hypothetical protein LOC100247307	-	7e-8	At5g61510	NADP-dependent oxidoreductase, putative	C.G.	S.X.	Please select
0.25	2e-98	357	1615535_at	CF209419	hypothetical protein LOC100247307	-	2e-42	At5g61510	NADP-dependent oxidoreductase, putative	C.G.	S.X.	Please select
0.01	2e+0	32	1619715_at	CF207152	hypothetical protein LOC100243011	-	5e-39	At1g30470	SIT4 phosphatase-associated family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1613616_at	CB981828	hypothetical protein LOC100260796	-	1e+0	At5g42040	RPN12b (Regulatory Particle Non-ATPase 12b)	C.G.	S.X.	Please select
0.02	2e+0	32	1612891_at	CB969442	hypothetical protein LOC100260359	-	9e-15	At3g12680	HUA1 (ENHANCER OF AG-4 1)	C.G.	S.X.	Please select
0.02	7e+0	30	1622373_at	CF516583	-	-	4e-1	At4g25410	DNA binding / transcription factor	C.G.	S.X.	Please select
0.02	7e+0	30	1621990_at	CB834254	-	-	3e-1	At1g01800	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.01	7e+0	30	1620644_at	CF207775	hypothetical protein LOC100260201	-	2e-71	At5g02820	RHL2 (ROOT HAIRLESS 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	7e-49	194	Arabidopsis thaliana	At5g61510	836272	NADP-dependent oxidoreductase, putative	F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:cell differentiation, response to high light intensity;C:unknown;BOFMPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	7e-16	85	Glycine max	Gma.6005.1.A1_at	BM188184	-	-	3e-1	At5g61510	NADP-dependent oxidoreductase, putative	C.G.	S.X.	Please select
0.03	1e+1	30	Hordeum vulgare	HV_CEb0001N22r2_x_at	HV_CEb0001N22r2	-	-	3e+0	At2g43350	ATGPX3 (GLUTATHIONE PEROXIDASE 3)	C.G.	S.X.	Please select
0.03	8e-7	56	Oryza sativa	Os10g0561100	AK110882.1	-	Quinone oxidoreductase	1e-3	At5g61510	NADP-dependent oxidoreductase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.26	3e-52	206	Populus trichocarpa	PtpAffx.13385.1.S1_at	BP934488	hypothetical protein	-	3e-40	At5g61510	NADP-dependent oxidoreductase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	3e-5	50	Triticum aestivum	TaAffx.80451.1.S1_at	CA696805	-	-	7e-5	At5g61510	NADP-dependent oxidoreductase, putative	C.G.	S.X.	Please select
0.02	7e-1	34	Zea mays	Zm.17180.1.A1_at	CK368433	hypothetical protein LOC100193657	-	5e+0	At2g43670	glycosyl hydrolase family protein 17	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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