Gene omics information

Query gene ID	1607534_at
Gene name	hypothetical protein LOC100248163
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	64.1	1607534_at	CB345110	hypothetical protein LOC100248163	-	3e-11	At2g38460	ATIREG1 (IRON-REGULATED PROTEIN 1)	S.X.	H.G.	Please select
0.77	92.3	1622020_s_at	BQ794212	hypothetical protein LOC100261607	-	1e-8	At4g20260	DREPP plasma membrane polypeptide family protein	S.X.	H.G.	Please select
0.55	77.3	1622431_at	CF371864	hypothetical protein LOC100264392	-	8e-1	At3g06895	unknown protein	S.X.	H.G.	Please select
0.50	72.7	1614761_at	CD797278	hypothetical protein LOC100266857	-	4e+0	At1g69920	ATGSTU12 (GLUTATHIONE S-TRANSFERASE TAU 12)	S.X.	H.G.	Please select
0.44	64.1	1616564_at	CB979976	-	-	4e-42	At3g26618	ERF1-3 (eukaryotic release factor 1-3)	S.X.	H.G.	Please select
0.40	57.7	1615750_at	CD800994	hypothetical protein LOC100261431	-	2e+0	At5g58787	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.8	99.6	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
9.4	99.6	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
9.1	99.5	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
8.7	99.5	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
8.3	99.4	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
7.5	99.2	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
7.5	99.2	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
7.3	99.2	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
7.0	99.1	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
6.2	98.8	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	2e-101	367	1607892_at	CF516549	hypothetical protein LOC100253294	-	4e-6	At2g38460	ATIREG1 (IRON-REGULATED PROTEIN 1)	C.G.	S.X.	Please select
0.02	2e+0	32	1622251_s_at	CF201793.1	hypothetical protein LOC100250629	-	5e-3	At4g08230	glycine-rich protein	C.G.	S.X.	Please select
0.03	2e+0	32	1622025_at	CB978608	-	-	4e+0	At5g10946	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1621411_at	CF214444	hypothetical protein LOC100266674	-	4e-1	At2g43640	signal recognition particle 14 kDa family protein / SRP14 family protein	C.G.	S.X.	Please select
0.03	2e+0	32	1621419_at	BQ796694	similar to Os09g0515500	-	4e+0	At3g53370	DNA-binding S1FA family protein	C.G.	S.X.	Please select
0.03	2e+0	32	1620151_at	CB349827	hypothetical protein LOC100257621	-	4e+0	At1g02620	GTP-binding protein (SAR1A)	C.G.	S.X.	Please select
0.02	2e+0	32	1618437_at	CB975851	hypothetical protein LOC100241577	-	7e-6	At5g15150	ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)	C.G.	S.X.	Please select
0.01	2e+0	32	1616332_at	CF210511	hypothetical protein LOC100259445	-	2e-1	At4g27660	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	1616315_s_at	CB970362	hypothetical protein LOC100254003	-	3e-16	At1g20330	SMT2 (STEROL METHYLTRANSFERASE 2)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	3e-11	69	Arabidopsis thaliana	At2g38460	818427	ATIREG1 (IRON-REGULATED PROTEIN 1)	F:transporter activity;P:iron ion transport;C:integral to membrane;MFPOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.84516.1.S1_at	BM307101	-	-	2e-2	At1g69190	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase/ dihydropteroate synthase	C.G.	S.X.	Please select
0.03	1e+1	30	Hordeum vulgare	HA06i14r_s_at	HA06i14r	-	-	8e-4	At5g15650	RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)	C.G.	S.X.	Please select
0.04	3e+0	34	Oryza sativa	OsAffx.20893.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	2e-19	97	Populus trichocarpa	PtpAffx.213692.1.S1_s_at	pmrna26730	hypothetical protein	-	5e+0	At2g46995	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	TaAffx.114263.1.S1_at	CA595998	-	-	9e-1	At4g24973	-	C.G.	S.X.	Please select
0.03	1e+1	30	Zea mays	Zm.9909.1.A1_at	BM332451	-	-	4e+0	At5g15725	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage