Gene omics information

Query gene ID	1607491_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	83.2	1607491_at	CF202496.1	-	-	3e+0	At4g10465	metal ion binding	S.X.	H.G.	Please select
0.77	92.3	1610318_at	CF206018.1	-	-	7e-15	At3g10210	-	S.X.	H.G.	Please select
0.67	87.9	1616309_at	CF206707.1	-	-	3e-23	At4g26840	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1)	S.X.	H.G.	Please select
0.67	87.9	1614842_at	CF205251.1	-	-	5e-10	At1g48830	40S ribosomal protein S7 (RPS7A)	S.X.	H.G.	Please select
0.59	80.6	1606971_at	CF206736.1	-	-	4e-63	At2g44120	60S ribosomal protein L7 (RPL7C)	S.X.	H.G.	Please select
0.53	75.2	1618080_at	CF202367.1	-	-	2e+0	At4g28556	RIC7	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.7	96.2	GSM436417	V. riparia (VR, PI588259) SD, 13h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM147730	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	59
3.5	95.7	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
3.2	94.9	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
3.2	94.9	GSM147724	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	53
3.1	94.6	GSM436415	V. riparia (VR, PI588259) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
3.0	94.2	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436421	V. riparia (VR, PI588259) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	2e-91	333	1620612_s_at	CF208882	similar to ADP-ribosylation factor	-	4e-128	At2g47170	ARF1A1C	C.G.	S.X.	Please select
0.25	2e-91	333	1612566_at	CF208882	-	-	4e-128	At2g47170	ARF1A1C	C.G.	S.X.	Please select
0.03	8e-1	32	1615234_at	CB342968	hypothetical protein LOC100258729	-	3e-17	At1g54350	ABC transporter family protein	C.G.	S.X.	Please select
0.03	3e+0	30	1622729_at	CF404193	hypothetical protein LOC100250371	-	2e-1	Atcg00065	-	C.G.	S.X.	Please select
0.03	3e+0	30	1622358_s_at	CF212311	hypothetical protein LOC100248535	-	7e-2	At2g28305	unknown protein	C.G.	S.X.	Please select
0.04	3e+0	30	1621129_at	CF205522.1	-	-	7e-1	At2g02060	transcription factor	C.G.	S.X.	Please select
0.03	3e+0	30	1620190_at	CA817971	hypothetical protein LOC100267159	-	1e-16	At5g13720	-	C.G.	S.X.	Please select
0.03	3e+0	30	1618063_at	CB980274	hypothetical protein LOC100259885	-	7e-6	At4g16830	nuclear RNA-binding protein (RGGA)	C.G.	S.X.	Please select
0.03	3e+0	30	1617938_at	CD720319	-	-	5e+0	At3g23727	SCRL12 (SCR-Like 12)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	32	Arabidopsis thaliana	At4g10465	5008132	metal ion binding	F:metal ion binding;P:metal ion transport;C:chloroplast;PBMO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	1e+0	34	Glycine max	HgAffx.3946.1.A1_at	CK348744	-	-	3e-2	At5g19800	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.03	5e+0	30	Hordeum vulgare	Contig21780_at	Contig21780	-	-	8e-2	At4g16700	PSD1 (phosphatidylserine decarboxylase 1)	C.G.	S.X.	Please select
0.03	5e+0	32	Oryza sativa	Os.5575.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	9e-1	34	Populus trichocarpa	PtpAffx.39475.1.A1_at	CK091334	hypothetical protein	-	1e+0	At3g06080	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	7e-1	34	Triticum aestivum	TaAffx.29728.1.S1_at	CA636545	-	-	1e+0	At1g68500	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	Zea mays	Zm.17715.1.A1_at	CF629905	-	-	5e+0	At5g54095	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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