CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1607466_at

Gene name similar to EMB2394 (EMBRYO DEFECTIVE 2394); structural constituent of ribosome

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.52 73.9 1607466_at CF413978 similar to EMB2394 (EMBRYO DEFECTIVE 2394); structural constituent of ribosome - 2e-17 At1g05190 emb2394 (embryo defective 2394) S.X. H.G.
0.82 93.9 1617061_s_at CD003896 hypothetical protein LOC100243475 - 2e-15 At5g55220 trigger factor type chaperone family protein S.X. H.G.
0.82 93.9 1615609_at CB971917 hypothetical protein LOC100268043 - 1e-11 At3g25920 RPL15 S.X. H.G.
0.71 89.5 1609228_at CF403419 hypothetical protein LOC100247047 - 9e-5 At2g21385 unknown protein S.X. H.G.
0.71 89.5 1614655_at CB969062 hypothetical protein LOC100267459 - 2e-61 At5g45930 CHLI2 (MAGNESIUM CHELATASE I2) S.X. H.G.
0.71 89.5 1606797_at CD714405 similar to 50S ribosomal protein L17, chloroplastic - 3e-8 At3g54210 ribosomal protein L17 family protein S.X. H.G.
0.67 87.9 1620684_at CA811105 hypothetical protein LOC100244408 - 5e-10 At1g64510 ribosomal protein S6 family protein S.X. H.G.
0.67 87.9 1610716_at CF211147 hypothetical protein LOC100265925 - 5e-16 At3g15190 chloroplast 30S ribosomal protein S20, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.4 99.4 GSM147726 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 55
6.0 98.7 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
4.6 97.6 GSM147714 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 43
4.1 96.9 GSM147693 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 22
4.1 96.9 GSM147675 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 4
4.0 96.7 GSM147720 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 49
4.0 96.7 GSM147692 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 21
4.0 96.7 GSM147738 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 67
4.0 96.7 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
4.0 96.7 GSM147727 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 56
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 9e-1 32 1612655_at CA810710 similar to Os11g0123400 - 7e-14 At2g38670 PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1) C.G. S.X.
0.05 9e-1 32 1609359_at CA809344 - - 1e-14 At1g17760 CSTF77 C.G. S.X.
0.03 9e-1 32 1608253_at BQ800315 hypothetical protein LOC100255251 - 4e-4 At5g59220 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.03 4e+0 30 1619124_at CB979012 - - 1e+0 At1g08220 - C.G. S.X.
0.03 4e+0 30 1618946_at CB972077 hypothetical protein LOC100247396 - 2e+0 At1g47290 AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1) C.G. S.X.
0.02 4e+0 30 1615874_at CF403960 hypothetical protein LOC100244966 - 2e-127 At1g07110 F2KP (FRUCTOSE-2,6-BISPHOSPHATASE) C.G. S.X.
0.02 4e+0 30 1613449_at CB972333 hypothetical protein LOC100250355 - 1e-7 At4g29950 microtubule-associated protein C.G. S.X.
0.03 4e+0 30 1613300_at CB969262 hypothetical protein LOC100252416 - 1e-6 At2g37990 ribosome biogenesis regulatory protein (RRS1) family protein C.G. S.X.
0.02 4e+0 30 1608089_at BQ796412 hypothetical protein LOC100242497 - 8e-9 At3g63080 ATGPX5 (glutathione peroxidase 5) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.45 2e-17 89 Arabidopsis thaliana At1g05190 839273 emb2394 (embryo defective 2394) F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope;BOAFPM - - - C.G. S.X.
0.45 4e-62 238 Glycine max Gma.13099.1.S1_at CD417080 - - 8e-12 At1g05190 emb2394 (embryo defective 2394) C.G. S.X.
0.05 6e-3 40 Hordeum vulgare Contig5573_at Contig5573 - - 1e-20 At1g05190 emb2394 (embryo defective 2394) C.G. S.X.
0.05 3e-5 50 Oryza sativa Os03g0356300 AK061469.1 - Ribosomal protein L6 family protein 4e-17 At1g05190 emb2394 (embryo defective 2394) C.G. S.X.
0.42 3e-53 208 Populus trichocarpa PtpAffx.111499.1.S1_at BU834614 - - 8e-12 At1g05190 emb2394 (embryo defective 2394) C.G. S.X.
0.19 1e-8 59 Triticum aestivum Ta.7980.3.S1_a_at CA617103 - - 5e-21 At1g05190 emb2394 (embryo defective 2394) C.G. S.X.
0.03 5e+0 30 Zea mays Zm.8187.2.A1_at CF626232 - - 3e-1 At1g20816 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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