CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1607415_at

Gene name hypothetical protein LOC100252123

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 93.6 1607415_at CB913224 hypothetical protein LOC100252123 - 9e-1 At2g01260 unknown protein S.X. H.G.
0.67 87.9 1616421_s_at CF213910 hypothetical protein LOC100245272 - 3e-63 At1g22780 PFL (POINTED FIRST LEAVES) S.X. H.G.
0.61 83.2 1620525_at CF415535 similar to RPL18AA (60S RIBOSOMAL PROTEIN L18A-1); structural constituent of ribosome - 5e-47 At3g14600 60S ribosomal protein L18A (RPL18aC) S.X. H.G.
0.60 81.9 1610997_at CD719330 hypothetical protein LOC100266516 - 1e-13 At3g53890 40S ribosomal protein S21 (RPS21B) S.X. H.G.
0.44 64.1 1606468_at CB346057 hypothetical protein LOC100256800 - 6e-25 At5g27850 60S ribosomal protein L18 (RPL18C) S.X. H.G.
0.14 14.4 1613860_s_at CF512506 cyc07 - 6e-38 At3g04840 40S ribosomal protein S3A (RPS3aA) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.1 94.6 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9 93.8 GSM436429 V. riparia (VR, PI588259) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436428 V. riparia (VR, PI588259) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2 89.9 GSM287886 Green soft berry C22 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM436399 V. riparia (VR, PI588259) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM287866 Green hard berry B21 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM436397 V. riparia (VR, PI588259) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436412 V. riparia (VR, PI588259) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.60 2e-119 426 1622585_s_at CF405272 hypothetical protein LOC100252123 - 6e-1 At2g01260 unknown protein C.G. S.X.
0.03 1e+0 32 1619499_at CF208527 hypothetical protein LOC100243214 - 1e-4 At5g58220 TTL (Transthyretin-Like protein) C.G. S.X.
0.02 1e+0 32 1619613_at CD801720 hypothetical protein LOC100267804 - 5e-7 At2g45180 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.03 1e+0 32 1611069_at CF512263 hypothetical protein LOC100243497 - 1e+0 At3g56710 SIB1 (SIGMA FACTOR BINDING PROTEIN 1) C.G. S.X.
0.03 4e+0 30 1621589_at CF516846 - - 6e-15 At5g56730 peptidase M16 family protein / insulinase family protein C.G. S.X.
0.03 4e+0 30 1614756_at CB003977 - - 3e-1 At1g26761 unknown protein C.G. S.X.
0.04 4e+0 30 1614114_at CF210993 hypothetical protein LOC100251903 - 3e-4 At3g10940 protein phosphatase-related C.G. S.X.
0.03 4e+0 30 1613617_at CB343285 - - 1e+0 At2g42670 unknown protein C.G. S.X.
0.03 4e+0 30 1611005_at CB003977 - - 3e-1 At1g26761 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 9e-1 34 Arabidopsis thaliana At2g01260 814653 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO - - - C.G. S.X.
0.05 9e-2 38 Glycine max Gma.13627.1.A1_at CD401962 - - 7e-1 At1g35820 unknown protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare HB30P16r_at HB30P16r - - 3e+0 At5g08505 - C.G. S.X.
0.03 7e+0 32 Oryza sativa Os10g0343700 9638.m01673 - - 1e+0 At3g33187 - C.G. S.X.
0.03 3e-1 36 Populus trichocarpa PtpAffx.9717.1.S1_at DN492350 hypothetical protein - 5e-16 At1g27595 - C.G. S.X.
0.04 2e+1 30 Triticum aestivum TaAffx.8733.1.S1_at CA620968 - - 2e-2 At1g12610 DDF1 (DWARF AND DELAYED FLOWERING 1) C.G. S.X.
0.04 6e+0 30 Zea mays Zm.12366.1.S1_at CA826895 - - 1e+1 At4g32590 ferredoxin-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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