CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1607408_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 92.3 1607408_at CF216013 - - 2e-1 At1g10720 BSD domain-containing protein S.X. H.G.
0.67 87.9 1622291_at CF518951 hypothetical protein LOC100266558 - 2e-1 At2g31670 - S.X. H.G.
0.60 81.9 1608262_at AF053341.1 class I extracellular chitinase - 2e+0 At3g04180 germin-like protein, putative S.X. H.G.
0.53 75.2 1618373_at Z68123.1 acidic chitinase - 2e-13 At5g24090 acidic endochitinase (CHIB1) S.X. H.G.
0.48 68.8 1608761_at CB982029 hypothetical protein LOC100253831 - 2e-12 At5g24530 DMR6 (DOWNY MILDEW RESISTANT 6) S.X. H.G.
0.40 57.7 1609131_at CF514932 hypothetical protein LOC100250973 - 4e-7 At1g21245 wall-associated kinase-related S.X. H.G.
0.33 45.7 1620994_at CD802275 hypothetical LOC100241718 /// hypothetical LOC100267841 - 8e-1 At5g28800 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
38.0 100.0 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
36.9 100.0 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
22.7 100.0 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
22.1 100.0 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
11.3 99.7 GSM147734 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 63
10.8 99.7 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
6.4 98.9 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
5.3 98.2 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.5 95.7 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
3.0 94.2 GSM147733 Vitis aestivalis 'Norton ' mock inoculateds at 4 h post inoculation 62
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-3 42 1614306_at CB974634 hypothetical protein LOC100265168 - 3e-1 At2g01070 - C.G. S.X.
0.04 5e-3 40 1620663_at CF607591 hypothetical protein LOC100248542 - 1e+0 At5g47200 ATRAB1A C.G. S.X.
0.03 2e-2 38 1622453_at CB002354 - - 1e-3 At2g13690 PRLI-interacting factor, putative C.G. S.X.
0.03 2e-2 38 1618629_at CB973528 hypothetical protein LOC100260878 - 1e-3 At2g13690 PRLI-interacting factor, putative C.G. S.X.
0.03 7e-2 36 1614412_s_at CB971898 hypothetical protein LOC100243985 - 5e-1 At3g17160 unknown protein C.G. S.X.
0.03 3e-1 34 1619869_at CF513928 hypothetical protein LOC100263034 - 3e-1 At4g20970 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.02 3e-1 34 1618573_at CF216076 - - 3e-2 At1g29220 transcriptional regulator family protein C.G. S.X.
0.03 3e-1 34 1617637_at CB974429 hypothetical protein LOC100245010 - 1e-3 At1g20220 nucleic acid binding C.G. S.X.
0.03 3e-1 34 1613690_at CF514742 - - 3e-1 At1g72645 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 36 Arabidopsis thaliana At1g10720 837615 BSD domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFVB - - - C.G. S.X.
0.05 9e-2 38 Glycine max HgAffx.21566.1.S1_at BI748187 - - 2e-4 At5g17760 AAA-type ATPase family protein C.G. S.X.
0.05 1e-1 36 Hordeum vulgare HVSMEn0012P04f2_at HVSMEn0012P04f2 - - 2e-1 At3g63030 MBD4 C.G. S.X.
0.02 1e-1 38 Oryza sativa Os03g0221500 AK103138.1 - Glycoside hydrolase, family 17 protein 1e-3 At2g01630 glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative C.G. S.X.
0.10 4e-4 46 Populus trichocarpa PtpAffx.202401.1.S1_s_at pmrna4824 hypothetical protein - 2e-1 At5g20920 EIF2 BETA C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.5883.1.S1_at CA696705 - - 6e-1 At4g28085 unknown protein C.G. S.X.
0.05 2e+0 32 Zea mays ZmAffx.1083.1.A1_at AI974922 - - 1e+0 At1g59830 PP2A-1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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