CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1607313_s_at

Gene name glutamine synthetase

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 72.7 1607313_s_at CB340858 glutamine synthetase - 2e-9 At5g16570 GLN1 S.X. H.G.
0.73 90.8 1610664_s_at CF213279 hypothetical protein LOC100259928 - 5e+0 At5g18661 unknown protein S.X. H.G.
0.67 87.9 1611423_s_at CB916855 hypothetical protein LOC100254781 - 4e+0 At4g01430 nodulin MtN21 family protein S.X. H.G.
0.55 77.3 1611394_at BQ794749 hypothetical protein LOC100241599 - 7e-5 At5g62840 phosphoglycerate/bisphosphoglycerate mutase family protein S.X. H.G.
0.42 60.1 1608777_at CB344861 hypothetical protein LOC100266496 - 6e-19 At3g63410 APG1 (ALBINO OR PALE GREEN MUTANT 1) S.X. H.G.
0.29 37.7 1607125_at CB342111 hypothetical protein LOC100242557 - 8e-2 At5g26820 ATIREG3 (IRON-REGULATED PROTEIN 3) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.0 94.2 GSM147689 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 18
3.0 94.2 GSM322364 genotype: Chardonnay - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.0 94.2 GSM147691 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation 20
2.9 93.8 GSM322365 genotype: Chardonnay - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.9 93.8 GSM147688 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 17
2.9 93.8 GSM147679 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 8
2.8 93.4 GSM147682 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 11
2.8 93.4 GSM147704 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 33
2.8 93.4 GSM147686 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 15
2.8 93.4 GSM147700 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation 29
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.96 0 1348 1612789_at CB340858 - - 2e-9 At5g16570 GLN1 C.G. S.X.
0.11 4e-29 127 1609819_s_at CF209842 glutamine synthetase - 5e-42 At3g17820 ATGSKB6 C.G. S.X.
0.11 4e-29 127 1606798_at CF209842 glutamine synthetase - 5e-42 At3g17820 ATGSKB6 C.G. S.X.
0.07 5e-13 73 1620767_at BQ800601 glutamine synthetase - 9e-47 At1g66200 ATGSR2 C.G. S.X.
0.02 7e-3 40 1613697_at CB971590 hypothetical protein LOC100261413 - 1e-119 At5g35630 GS2 (GLUTAMINE SYNTHETASE 2) C.G. S.X.
0.02 3e-2 38 1612169_at CF514652 hypothetical protein LOC100243098 - 2e-16 At3g12390 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative C.G. S.X.
0.03 4e-1 34 1622310_at CD721207 - - 3e-1 At3g22920 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative C.G. S.X.
0.03 4e-1 34 1618520_at CD721207 - - 3e-1 At3g22920 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative C.G. S.X.
0.02 4e-1 34 1610504_at CB974454 hypothetical protein LOC100258133 - 6e-9 At1g63220 C2 domain-containing protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 2e-9 63 Arabidopsis thaliana At5g16570 831519 GLN1 Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium - - - C.G. S.X.
0.27 4e-26 119 Glycine max Gma.4375.1.A1_at AF363021.1 cytosolic glutamine synthetase beta2 - 6e-30 At5g37600 ATGSR1 C.G. S.X.
0.06 5e-8 57 Hordeum vulgare Contig1648_at Contig1648 - - 3e-18 At1g66200 ATGSR2 C.G. S.X.
0.04 1e-2 42 Oryza sativa Os02g0735200 AK071969.1 - Glutamine synthetase shoot isozyme (EC 6.3.1.2)(Glutamate--ammonia ligase) (Clone lambda-GS28) 9e-78 At3g17820 ATGSKB6 C.G. S.X.
0.15 2e-34 147 Populus trichocarpa PtpAffx.249.783.S1_at CV282240 hypothetical protein - 8e-21 At3g17820 ATGSKB6 C.G. S.X.
0.06 1e-4 48 Triticum aestivum Ta.26941.1.S1_at CD491257 - - 3e-11 At3g17820 ATGSKB6 C.G. S.X.
0.04 4e-5 48 Zea mays Zm.46.1.A1_s_at BM351264 glutamine synthetase4 /// glutamine synthetase5 - 3e-43 At3g17820 ATGSKB6 C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage