CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1607294_at

Gene name hypothetical protein LOC100246786

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 94.6 1607294_at CB347461 hypothetical protein LOC100246786 - 4e-112 At5g58290 RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) S.X. H.G.
0.80 93.6 1616931_s_at CF511798 similar to PBC1 (20S proteasome beta subunit C1); peptidase - 5e-66 At1g21720 PBC1 (PROTEASOME BETA SUBUNIT C1) S.X. H.G.
0.80 93.6 1615440_at CF210450 hypothetical protein LOC100257857 - 9e-5 At5g49945 unknown protein S.X. H.G.
0.73 90.8 1618227_at CB981519 hypothetical protein LOC100256050 - 4e-20 At1g73570 suppressor of lin-12-like protein-related / sel-1 protein-related S.X. H.G.
0.67 87.9 1606813_s_at CF211962 hypothetical protein LOC100245986 - 9e-77 At5g47200 ATRAB1A S.X. H.G.
0.55 77.3 1619471_at BQ794353 hypothetical protein LOC100243217 - 1e-112 At3g46060 ATRAB8A S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1.9 87.2 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
1.9 87.2 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
1.8 86.0 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
1.7 84.7 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
1.7 84.7 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.6 83.3 GSM147729 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 58
1.6 83.3 GSM436363 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.6 83.3 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
1.6 83.3 GSM147734 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 63
1.6 83.3 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-7 54 1615004_at CF413756 hypothetical protein LOC100243563 - 2e-106 At1g45000 26S proteasome regulatory complex subunit p42D, putative C.G. S.X.
0.02 5e-7 54 1614937_s_at CF413756 hypothetical protein LOC100243563 - 2e-106 At1g45000 26S proteasome regulatory complex subunit p42D, putative C.G. S.X.
0.03 3e-5 48 1612683_at AF220406.1 - - 2e-58 At1g45000 26S proteasome regulatory complex subunit p42D, putative C.G. S.X.
0.03 1e-4 46 1622625_at CD717253 - - 3e-79 At4g27680 MSP1 protein, putative / intramitochondrial sorting protein, putative C.G. S.X.
0.03 1e-4 46 1618800_at CD717253 hypothetical protein LOC100264007 - 3e-79 At4g27680 MSP1 protein, putative / intramitochondrial sorting protein, putative C.G. S.X.
0.01 5e-1 34 1622464_at BQ796673 hypothetical protein LOC100260728 - 3e-40 At5g54770 THI1 C.G. S.X.
0.02 5e-1 34 1622201_at CB835667 - - 1e+0 At4g36450 ATMPK14 (Mitogen-activated protein kinase 14) C.G. S.X.
0.01 5e-1 34 1610238_s_at CF404536 hypothetical protein LOC100250511 - 0 At1g06430 FTSH8 C.G. S.X.
0.02 5e-1 34 1609595_at CB835667 - - 1e+0 At4g36450 ATMPK14 (Mitogen-activated protein kinase 14) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.48 4e-112 404 Arabidopsis thaliana At5g58290 835941 RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) 26S proteasome AAA-ATPase subunit RPT3 (RPT3) mRNA, - - - C.G. S.X.
0.42 2e-105 383 Glycine max Gma.1686.1.S1_a_at AW350956 - - 5e-141 At5g58290 RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) C.G. S.X.
0.44 3e-68 258 Hordeum vulgare HVSMEk0005D04r2_s_at HVSMEk0005D04r2 - - 8e-42 At5g58290 RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) C.G. S.X.
0.40 2e-94 347 Oryza sativa Os02g0325100 AK059237.1 - 26S protease regulatory subunit 6B homolog (26Sproteasome AAA-ATPase subunit RPT3) (Regulatory particletriple-A ATPase subunit 3) 4e-89 At5g58290 RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) C.G. S.X.
0.57 4e-131 468 Populus trichocarpa Ptp.5345.2.S1_at CF119487 - - 8e-98 At5g58290 RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) C.G. S.X.
0.50 1e-62 240 Triticum aestivum Ta.21374.1.S1_x_at CD873343 - - 5e-38 At5g58290 RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) C.G. S.X.
0.48 3e-117 420 Zea mays Zm.16789.1.S1_a_at AY530962.1 26S protease regulatory subunit 6B /// 26S proteasome regulatory complex ATPase RPT3 - 3e-77 At5g58290 RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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