CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1607289_at

Gene name hypothetical protein LOC100243734

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.97 99.9 1607289_at CD802115 hypothetical protein LOC100243734 - 9e-2 At3g29020 MYB110 (myb domain protein 110) S.X. H.G.
0.55 77.3 1606735_at CB970224 hypothetical protein LOC100249353 - 4e+0 At3g15420 unknown protein S.X. H.G.
0.52 73.9 1618642_at CF604519 hypothetical protein LOC100265629 - 5e-13 At5g51410 LUC7 N_terminus domain-containing protein S.X. H.G.
0.50 72.7 1613731_at CF513972 hypothetical protein LOC100248748 - 2e-5 At5g63840 RSW3 (RADIAL SWELLING 3) S.X. H.G.
0.43 61.5 1612122_at BQ800294 hypothetical protein LOC100246317 /// hypothetical protein LOC100254873 - 1e-17 At3g13870 RHD3 (ROOT HAIR DEFECTIVE 3) S.X. H.G.
0.41 58.7 1617131_at CF511594 hypothetical protein LOC100242326 - 2e+0 At1g54095 unknown protein S.X. H.G.
0.35 48.5 1615804_at CF403733 - - 4e-2 At5g65910 BSD domain-containing protein S.X. H.G.
0.34 46.8 1619715_at CF207152 hypothetical protein LOC100243011 - 5e-39 At1g30470 SIT4 phosphatase-associated family protein S.X. H.G.
0.34 46.8 1612431_at CA810329 - - 1e+0 At2g16720 MYB7 (MYB DOMAIN PROTEIN 7) S.X. H.G.
0.33 45.7 1614287_at CF510757 hypothetical protein LOC100243855 - 1e-16 At2g20650 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.6 96.0 GSM436351 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM436350 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM147718 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 47
2.7 93.0 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
2.5 91.9 GSM147719 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 48
2.3 90.7 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.3 90.7 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
2.1 89.1 GSM147737 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 66
2.0 88.2 GSM436357 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM147742 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 71
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 32 1616780_at CF415162 hypothetical protein LOC100265405 - 2e-8 At5g60210 - C.G. S.X.
0.03 2e+0 32 1614743_at CB009200 hypothetical protein LOC100264020 - 2e-1 At2g47790 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.03 6e+0 30 1622254_at CB341104 - - 2e-1 At2g33793 unknown protein C.G. S.X.
0.02 6e+0 30 1622058_at CB836542 - - 6e+0 At5g26594 ARR24 (Arabidopsis response regulator 24) C.G. S.X.
0.02 6e+0 30 1620816_at BQ800154 hypothetical protein LOC100264994 - 1e-3 At2g44670 senescence-associated protein-related C.G. S.X.
0.02 6e+0 30 1620728_at CA818747 hypothetical protein LOC100245878 - 2e+0 At4g14104 unknown protein C.G. S.X.
0.03 6e+0 30 1620273_at CB340852 - - 2e-1 At2g33793 unknown protein C.G. S.X.
0.02 6e+0 30 1617912_at CB341484 hypothetical protein LOC100259655 - 3e-5 At3g53990 universal stress protein (USP) family protein C.G. S.X.
0.02 6e+0 30 1615714_at CF201075.1 - - 3e-4 At1g07250 UGT71C4 (UDP-GLUCOSYL TRANSFERASE 71C4) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 9e-2 38 Arabidopsis thaliana At3g29020 822542 MYB110 (myb domain protein 110) Encodes a putative transcription factor (MYB110). - - - C.G. S.X.
0.03 8e-3 42 Glycine max Gma.16972.1.S1_at CD418243 - - 1e-3 At3g23760 - C.G. S.X.
0.03 3e+0 32 Hordeum vulgare EBro04_SQ004_L10a_at EBro04_SQ004_L10a - - 8e+0 At5g19890 peroxidase, putative C.G. S.X.
0.04 1e+1 32 Oryza sativa OsAffx.9722.1.S1_at - - - 0 C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.225607.1.S1_s_at pmrna45066 hypothetical protein - 2e-2 At1g61460 S-locus protein kinase, putative C.G. S.X.
0.03 6e+0 32 Triticum aestivum TaAffx.89901.2.S1_at BJ300957 - - 3e-7 At1g69420 zinc finger (DHHC type) family protein C.G. S.X.
0.03 4e-2 38 Zea mays Zm.3727.1.A1_at AW331138 - - 1e-10 At4g31480 coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage