CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1607287_a_at

Gene name hypothetical protein LOC100248273

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1607287_a_at CA817984 hypothetical protein LOC100248273 - 3e-16 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) S.X. H.G.
0.73 90.8 1607466_at CF413978 similar to EMB2394 (EMBRYO DEFECTIVE 2394); structural constituent of ribosome - 2e-17 At1g05190 emb2394 (embryo defective 2394) S.X. H.G.
0.67 87.9 1620684_at CA811105 hypothetical protein LOC100244408 - 5e-10 At1g64510 ribosomal protein S6 family protein S.X. H.G.
0.53 75.2 1608691_at CB345817 hypothetical protein LOC100248623 - 6e-27 At1g78630 emb1473 (embryo defective 1473) S.X. H.G.
0.46 66.5 1606458_at BQ792397 hypothetical protein LOC100251697 - 4e-11 At3g44890 RPL9 (RIBOSOMAL PROTEIN L9) S.X. H.G.
0.33 45.7 1606797_at CD714405 similar to 50S ribosomal protein L17, chloroplastic - 3e-8 At3g54210 ribosomal protein L17 family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.8 99.0 GSM147726 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 55
5.2 98.2 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
4.8 97.8 GSM147730 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 59
4.4 97.3 GSM147693 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 22
4.3 97.2 GSM147714 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 43
3.9 96.6 GSM147692 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 21
3.9 96.6 GSM147738 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 67
3.9 96.6 GSM147673 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 2
3.8 96.4 GSM147720 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 49
3.8 96.4 GSM147672 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-2 36 1611055_at CB975661 hypothetical protein LOC100260295 - 1e-1 At1g80920 J8 C.G. S.X.
0.03 8e-2 36 1608121_at CB008609 hypothetical protein LOC100264243 - 4e-1 At2g22090 UBP1 interacting protein 1a (UBA1a) C.G. S.X.
0.03 3e-1 34 1621785_at CF213480 hypothetical protein LOC100242004 - 2e-101 At2g44610 RAB6A C.G. S.X.
0.03 3e-1 34 1608767_at CF202491.1 - - 2e-2 At5g13450 ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative C.G. S.X.
0.02 1e+0 32 1621538_at CA809611 hypothetical protein LOC100261262 - 4e-1 At2g43810 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative C.G. S.X.
0.04 1e+0 32 1618123_at CA809099 hypothetical protein LOC100242775 - 1e-3 At5g62020 AT-HSFB2A C.G. S.X.
0.02 1e+0 32 1617692_at CB917302 hypothetical protein LOC100256614 - 3e-24 At5g65840 - C.G. S.X.
0.03 1e+0 32 1617116_s_at CA817983 - - 3e+0 At4g34290 SWIB complex BAF60b domain-containing protein C.G. S.X.
0.03 1e+0 32 1617089_at CB969922 - - 4e+0 At5g67190 AP2 domain-containing transcription factor, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 3e-16 85 Arabidopsis thaliana At3g56910 824858 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope;PM - - - C.G. S.X.
0.11 1e-7 57 Glycine max Gma.11226.1.S1_at CD394952 - - 4e-7 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) C.G. S.X.
0.09 4e-5 48 Hordeum vulgare Contig6817_at Contig6817 - - 2e-2 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) C.G. S.X.
0.09 6e-7 56 Oryza sativa Os01g0278900 AK120429.1 - Hypothetical protein 3e-7 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) C.G. S.X.
0.13 7e-12 71 Populus trichocarpa Ptp.3375.1.S1_at CV281370 hypothetical protein - 7e-6 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) C.G. S.X.
0.08 1e-3 44 Triticum aestivum Ta.28336.1.S1_x_at CK152774 - - 1e-1 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) C.G. S.X.
0.07 1e-4 46 Zea mays Zm.16299.2.A1_a_at BM336250 50S ribosomal protein L40 - 7e-2 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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