CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1607286_at

Gene name hypothetical protein LOC100267511

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 92.3 1607286_at CF207311 hypothetical protein LOC100267511 - 3e-69 At3g12150 unknown protein S.X. H.G.
0.60 81.9 1620542_at CB344230 hypothetical protein LOC100255788 - 9e-31 At2g16800 high-affinity nickel-transport family protein S.X. H.G.
0.60 81.9 1616579_at CF514965 hypothetical protein LOC100260111 - 6e-2 At3g12360 ITN1 (INCREASED TOLERANCE TO NACL) S.X. H.G.
0.53 75.2 1610068_at CD711769 hypothetical protein LOC100252154 - 2e-19 At2g36670 aspartyl protease family protein S.X. H.G.
0.46 66.5 1620426_at CF515986 similar to DNA-binding protein - 1e-20 At1g13960 WRKY4 S.X. H.G.
0.43 61.5 1619252_at CF206010.1 hypothetical protein LOC100242409 - 1e-28 At3g01850 ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative S.X. H.G.
0.29 37.7 1617283_at CF372456 hypothetical LOC100245758 - 4e-20 At3g49680 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.5 99.2 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.2 98.8 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.2 98.2 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.8 97.8 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
4.1 96.9 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.1 96.9 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.9 96.6 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.7 96.2 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.6 96.0 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.4 95.5 GSM299458 D_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 36 1618432_at CB345244 hypothetical protein LOC100267315 - 6e+0 At5g13825 unknown protein C.G. S.X.
0.02 4e-1 34 1616920_at CF512566 hypothetical protein LOC100251933 - 2e-12 At5g05610 AL1 (ALFIN-LIKE 1) C.G. S.X.
0.02 2e+0 32 1622636_at AY174164.1 ornithine decarboxylase - 2e+0 At1g11170 unknown protein C.G. S.X.
0.02 2e+0 32 1618814_at AY174164.1 ornithine decarboxylase - 2e+0 At1g11170 unknown protein C.G. S.X.
0.03 2e+0 32 1613624_at CB970090 - - 1e+0 At5g15670 F-box family protein C.G. S.X.
0.03 2e+0 32 1613054_at BQ794856 hypothetical protein LOC100257133 - 1e-25 At4g34760 auxin-responsive family protein C.G. S.X.
0.03 2e+0 32 1609077_at CF606671 hypothetical protein LOC100264912 - 3e-13 At5g16050 GRF5 (GENERAL REGULATORY FACTOR 5) C.G. S.X.
0.01 2e+0 32 1608296_at BQ799613 hypothetical protein LOC100242444 - 3e-127 At2g43710 SSI2 C.G. S.X.
0.02 6e+0 30 1619954_at CB974333 hypothetical protein LOC100257028 - 7e-16 At5g07830 AtGUS2 (Arabidopsis thaliana glucuronidase 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.44 3e-69 262 Arabidopsis thaliana At3g12150 820392 unknown protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;MBPO - - - C.G. S.X.
0.28 4e-60 232 Glycine max GmaAffx.85378.1.S1_at BG041928 - - 2e-52 At3g12150 unknown protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HV05C10u_at HV05C10u - - 3e+0 At5g15760 plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative C.G. S.X.
0.09 1e-2 42 Oryza sativa Os02g0195000 AK109481.1 - Conserved hypothetical protein 9e-4 At3g12150 unknown protein C.G. S.X.
0.49 9e-126 450 Populus trichocarpa Ptp.1508.1.A1_s_at CK093069 hypothetical protein - 1e-100 At3g12150 unknown protein C.G. S.X.
0.15 3e-1 36 Triticum aestivum TaAffx.98376.1.S1_at BE493612 - - 3e+0 At5g25010 unknown protein C.G. S.X.
0.08 6e-10 63 Zea mays Zm.5692.1.S1_at AI629972 hypothetical protein LOC100276119 - 1e-12 At3g12150 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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