Gene omics information

Query gene ID	1607281_at
Gene name	hypothetical protein LOC100247365
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.3	1607281_at	CB976932	hypothetical protein LOC100247365	-	5e-115	At5g55190	RAN3 (RAN GTPASE 3)	S.X.	H.G.	Please select
0.80	93.6	1615556_at	CB969107	hypothetical protein LOC100256985	-	5e-17	At2g28680	cupin family protein	S.X.	H.G.	Please select
0.60	81.9	1618658_at	CF215632	hypothetical protein LOC100266093	-	3e-15	At5g10230	ANNAT7 (ANNEXIN ARABIDOPSIS 7)	S.X.	H.G.	Please select
0.50	72.7	1620493_at	CF518674	hypothetical protein LOC100266795	-	2e-6	At5g41960	unknown protein	S.X.	H.G.	Please select
0.42	60.1	1621259_at	BQ792070	hypothetical protein LOC100256240	-	2e-33	At5g04740	ACT domain-containing protein	S.X.	H.G.	Please select
0.31	41.3	1613813_a_at	CF517294	-	-	3e-11	At5g62000	ARF2 (AUXIN RESPONSE FACTOR 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.5	98.9	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.9	98.6	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.9	98.6	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.7	98.5	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.6	98.4	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.1	98.1	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.0	98.0	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.0	98.0	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.9	97.9	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.8	97.8	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.51	4e-156	549	1610919_at	CA816890	hypothetical protein LOC100250818	-	2e-121	At5g20020	RAN2	C.G.	S.X.	Please select
0.53	3e-101	367	1619516_s_at	CF209163	hypothetical protein LOC100266996	-	3e-104	At5g55190	RAN3 (RAN GTPASE 3)	C.G.	S.X.	Please select
0.44	2e-96	351	1609619_at	CB982264	hypothetical protein LOC100242237	-	5e-103	At5g55190	RAN3 (RAN GTPASE 3)	C.G.	S.X.	Please select
0.38	2e-59	228	1619376_at	CF204975.1	-	-	8e-61	At5g55190	RAN3 (RAN GTPASE 3)	C.G.	S.X.	Please select
0.25	4e-36	151	1621118_s_at	CD801405	hypothetical protein LOC100247365	-	9e+0	At2g27080	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	C.G.	S.X.	Please select
0.02	9e-3	40	1619728_at	BM437855	-	-	1e-35	At3g12160	RABA4D (RAB GTPASE HOMOLOG A4D)	C.G.	S.X.	Please select
0.02	9e-3	40	1607044_at	BM437855	hypothetical protein LOC100246065	-	1e-35	At3g12160	RABA4D (RAB GTPASE HOMOLOG A4D)	C.G.	S.X.	Please select
0.02	1e-1	36	1609774_s_at	CA817625	hypothetical protein LOC100258211	-	2e-34	At5g45130	RHA1 (RAB HOMOLOG 1)	C.G.	S.X.	Please select
0.02	6e-1	34	1618519_at	CF214731	hypothetical protein LOC100253375	-	3e-5	At5g49300	zinc finger (GATA type) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.61	5e-115	414	Arabidopsis thaliana	At5g55190	835612	RAN3 (RAN GTPASE 3)	A member of RAN GTPase gene family. Encodes a small soluble GTP-binding protein. Likely to be involved in nuclear translocation of proteins. May also be involved in cell cycle progression.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.65	6e-143	508	Glycine max	GmaAffx.92555.1.S1_s_at	CF808280	-	-	2e-113	At5g20020	RAN2	C.G.	S.X.	Please select
0.34	2e-79	295	Hordeum vulgare	Contig1813_s_at	Contig1813	-	-	1e-121	At5g55190	RAN3 (RAN GTPASE 3)	C.G.	S.X.	Please select
0.47	4e-74	280	Oryza sativa	Os05g0574500	AB015972.1	-	GTP-binding nuclear protein RAN1B (Fragment)	1e-112	At5g20020	RAN2	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.54	8e-158	557	Populus trichocarpa	Ptp.5444.1.S1_at	BU869351	hypothetical protein	-	6e-121	At5g20010	RAN-1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.37	5e-66	252	Triticum aestivum	Ta.2777.2.S1_a_at	BJ318404	small Ran-related GTP-binding protein	-	2e-118	At5g55190	RAN3 (RAN GTPASE 3)	C.G.	S.X.	Please select
0.48	1e-98	359	Zea mays	Zm.16498.1.S1_at	AY103577.1	hypothetical protein LOC100193260	-	1e-109	At5g55190	RAN3 (RAN GTPASE 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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