Gene omics information

Query gene ID	1607279_at
Gene name	hypothetical protein LOC100242386
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1607279_at	CF212545	hypothetical protein LOC100242386	-	4e-1	At1g64750	ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))	S.X.	H.G.	Please select
0.50	72.7	1613953_at	CF202492.1	-	-	3e-2	At5g63220	unknown protein	S.X.	H.G.	Please select
0.30	39.4	1609938_at	CF515319	hypothetical protein LOC100267803	-	4e-6	At3g18640	zinc finger protein-related	S.X.	H.G.	Please select
0.29	37.7	1609633_s_at	CB971333	hypothetical protein LOC100254082	-	3e-1	At4g15735	SCRL10 (SCR-Like 10)	S.X.	H.G.	Please select
0.19	20.9	1608167_s_at	CF414860	hypothetical protein LOC100252467	-	4e-34	At5g56670	40S ribosomal protein S30 (RPS30C)	S.X.	H.G.	Please select
0.16	16.7	1612905_s_at	CB345326	hypothetical protein LOC100258381	-	5e-3	At1g12830	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.1	98.1	GSM436415	V. riparia (VR, PI588259) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.2	97.1	GSM436417	V. riparia (VR, PI588259) SD, 13h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436420	V. riparia (VR, PI588259) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436395	V. riparia (VR, PI588259) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436421	V. riparia (VR, PI588259) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436416	V. riparia (VR, PI588259) SD, 13h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436410	V. riparia (VR, PI588259) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436402	V. riparia (VR, PI588259) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	36	1608876_at	CA817147	hypothetical protein LOC100261976	-	2e-9	At1g47970	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	34	1621242_at	CD006142	-	-	1e+0	At4g37880	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.02	4e-1	34	1617249_at	CB340566	hypothetical protein LOC100253968	-	6e-6	At4g25050	ACP4 (acyl carrier protein 4)	C.G.	S.X.	Please select
0.03	4e-1	34	1608640_at	CD006142	-	-	1e+0	At4g37880	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.02	4e-1	34	1608437_s_at	CD712894	hypothetical protein LOC100261000	-	9e-6	At1g73885	unknown protein	C.G.	S.X.	Please select
0.02	4e-1	34	1606824_at	CD712894	-	-	9e-6	At1g73885	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1622797_at	CF405307	similar to Al-induced protein	-	2e-22	At5g19140	AILP1	C.G.	S.X.	Please select
0.02	2e+0	32	1622594_at	CF216086	hypothetical protein LOC100266248	-	2e-6	At1g68490	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1622195_at	CB969266	hypothetical protein LOC100248937	-	3e-15	At4g07990	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	4e-1	36	Arabidopsis thaliana	At1g64750	842783	ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	3e-15	83	Glycine max	Gma.10951.1.A1_at	BU548254	-	-	1e-3	At5g45010	ATDSS1(V) (Arabidopsis dss1 homolog on chromosome V)	C.G.	S.X.	Please select
0.08	2e-4	46	Hordeum vulgare	Contig3224_s_at	Contig3224	-	-	7e-5	At1g64750	ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))	C.G.	S.X.	Please select
0.07	1e-5	52	Oryza sativa	Os02g0756800	AK119788.1	-	Phosphate-induced protein 1 conserved regionfamily protein	4e-13	At1g64750	ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	6e-10	65	Populus trichocarpa	PtpAffx.258.1.A1_at	CV237289	hypothetical protein	-	3e-14	At1g64750	ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.08	4e-1	36	Triticum aestivum	TaAffx.85537.2.S1_at	CA625741	-	-	7e-2	At1g64750	ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))	C.G.	S.X.	Please select
0.06	2e-1	36	Zea mays	Zm.3272.1.A1_at	CF633404	deleted in split hand/splt foot protein 1	-	7e-3	At1g64750	ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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