Gene omics information

Query gene ID	1607234_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.88	95.4	1607234_at	CF373784	-	-	3e-1	Atmg00820	-	S.X.	H.G.	Please select
0.40	57.7	1619082_at	CF215502	hypothetical protein LOC100244103	-	3e-26	At1g26770	ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)	S.X.	H.G.	Please select
0.35	48.5	1617919_at	CF605842	hypothetical protein LOC100261876	-	2e+0	At4g26830	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	S.X.	H.G.	Please select
0.34	46.8	1616761_at	CF606556	hypothetical protein LOC100243770	-	6e-5	At4g28310	unknown protein	S.X.	H.G.	Please select
0.30	39.4	1615445_at	BQ794327	-	-	5e-3	At5g02380	MT2B (METALLOTHIONEIN 2B)	S.X.	H.G.	Please select
0.29	37.7	1613562_at	CF210939	hypothetical protein LOC100247400	-	3e-2	At1g73010	phosphatase	S.X.	H.G.	Please select
0.26	32.0	1609159_at	CF213225	hypothetical protein LOC100254544	-	4e-6	At1g56430	NAS4 (NICOTIANAMINE SYNTHASE 4)	S.X.	H.G.	Please select
0.21	24.0	1613614_at	CB975388	hypothetical protein LOC100252480	-	3e-16	At1g26945	KDR (KIDARI)	S.X.	H.G.	Please select
0.19	20.9	1615464_at	CF604585	hypothetical protein LOC100264148	-	2e-1	At2g34050	-	S.X.	H.G.	Please select
0.18	19.4	1621058_at	CF205681.1	-	-	8e-2	At3g15360	TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
148.3	100.0	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
6.3	98.8	GSM436420	V. riparia (VR, PI588259) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.0	96.7	GSM436403	V. riparia (VR, PI588259) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM436397	V. riparia (VR, PI588259) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436421	V. riparia (VR, PI588259) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436401	V. riparia (VR, PI588259) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436399	V. riparia (VR, PI588259) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM436398	V. riparia (VR, PI588259) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.4	79.9	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	36	1621067_at	CF511425	hypothetical protein LOC100256695	-	1e-1	At2g22990	SNG1 (SINAPOYLGLUCOSE 1)	C.G.	S.X.	Please select
0.02	4e-1	34	1617113_at	BQ793599	hypothetical protein LOC100257592	-	1e-1	At5g15600	SP1L4 (SPIRAL1-LIKE4)	C.G.	S.X.	Please select
0.02	2e+0	32	1621483_at	BQ796003	hypothetical protein LOC100254964	-	2e-6	At1g12810	proline-rich family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1614436_at	CF415505	-	-	1e-4	At4g15120	VQ motif-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	1614322_at	CB834359	-	-	3e-1	At5g17460	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1613959_at	CB349085	hypothetical protein LOC100260703	-	4e-17	At5g53070	ribosomal protein L9 family protein	C.G.	S.X.	Please select
0.03	2e+0	32	1613913_at	BQ794958	-	-	1e+0	At2g40600	appr-1-p processing enzyme family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1610550_at	CB834359	-	-	3e-1	At5g17460	unknown protein	C.G.	S.X.	Please select
0.03	6e+0	30	1621424_at	CB979690	-	-	4e+0	At4g24660	ATHB22 (HOMEOBOX PROTEIN 22)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	Atmg00820	-	-	hypothetical protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e-1	36	Glycine max	GmaAffx.76380.1.S1_s_at	BE583901	-	-	3e+0	At5g32440	-	C.G.	S.X.	Please select
0.04	2e-1	36	Hordeum vulgare	Contig17670_at	Contig17670	-	-	3e+0	At5g48420	unknown protein	C.G.	S.X.	Please select
0.04	2e-1	38	Oryza sativa	OsAffx.5099.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.212534.1.S1_at	pmrna24549	hypothetical protein	-	5e-2	At2g41410	calmodulin, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	TaAffx.56368.1.S1_at	CA653301	-	-	2e-1	At2g39020	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	ZmAffx.845.1.A1_at	AI770615	-	-	3e-2	At3g50980	XERO1 (DEHYDRIN XERO 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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