CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1607146_at

Gene name hypothetical LOC100266416

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.65 85.0 1607146_at CK138255.1 hypothetical LOC100266416 - 8e-2 At1g13550 unknown protein S.X. H.G.
0.32 43.1 1609237_at CF205706.1 - - 3e-1 At1g15800 unknown protein S.X. H.G.
0.22 25.6 1621307_at CB969961 hypothetical protein LOC100267022 - 2e-21 At3g44720 ADT4 (arogenate dehydratase 4) S.X. H.G.
0.20 22.4 1610623_s_at CD802108 hypothetical protein LOC100258038 - 2e-1 At5g65180 - S.X. H.G.
0.20 22.4 1608898_at CA818027 hypothetical protein LOC100250146 - 3e-4 At5g20110 dynein light chain, putative S.X. H.G.
0.17 18.2 1606659_s_at CF210179 hypothetical protein LOC100244564 - 2e-19 At1g29280 WRKY65 S.X. H.G.
0.17 18.2 1620443_s_at CF609276 hypothetical protein LOC100245907 /// hypothetical protein LOC100265993 - 2e-1 At5g65870 ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR) S.X. H.G.
0.15 15.6 1611244_at CD010208 hypothetical protein LOC100261363 - 1e+0 At3g07850 exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase S.X. H.G.
0.11 11.3 1619357_at CB972316 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase - 3e-71 At1g22410 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative S.X. H.G.
0.11 11.3 1614464_s_at BQ797149 similar to pathogenesis-related protein 10 - 2e+0 At3g23850 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.2 99.9 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
13.1 99.8 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
10.5 99.7 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.6 99.3 GSM436419 V. riparia (VR, PI588259) SD, 13h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
7.5 99.2 GSM436418 V. riparia (VR, PI588259) SD, 13h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
7.1 99.1 GSM436421 V. riparia (VR, PI588259) SD, 13h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
6.2 98.8 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
6.0 98.7 GSM436422 V. riparia (VR, PI588259) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
5.2 98.2 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.2 98.2 GSM436426 V. riparia (VR, PI588259) SD, 13h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1283 1619807_at CK138255.1 - - 8e-2 At1g13550 unknown protein C.G. S.X.
0.58 4e-177 619 1616568_at CF214090 hypothetical protein LOC100261208 - 2e+0 At4g36530 hydrolase, alpha/beta fold family protein C.G. S.X.
0.19 2e-61 234 1619603_at CD009101 - - 1e+0 At3g02080 40S ribosomal protein S19 (RPS19A) C.G. S.X.
0.19 2e-61 234 1615846_at CD009101 hypothetical LOC100266416 - 1e+0 At3g02080 40S ribosomal protein S19 (RPS19A) C.G. S.X.
0.03 4e-1 34 1622646_at CD715208 - - 1e+0 At2g16710 hesB-like domain-containing protein C.G. S.X.
0.03 4e-1 34 1609964_at CD715208 - - 1e+0 At2g16710 hesB-like domain-containing protein C.G. S.X.
0.02 2e+0 32 1620804_at CD797824 hypothetical protein LOC100267227 - 3e-114 At1g55360 unknown protein C.G. S.X.
0.02 2e+0 32 1620003_at BQ796570 hypothetical protein LOC100251303 - 9e-5 At2g18800 XTH21 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21) C.G. S.X.
0.02 2e+0 32 1619880_at CD714848 - - 1e-3 At1g64385 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 8e-2 38 Arabidopsis thaliana At1g13550 837916 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.06 1e-4 48 Glycine max Gma.10523.1.A1_at BG550873 - - 4e-1 At3g28925 - C.G. S.X.
0.04 3e+0 32 Hordeum vulgare Contig1519_s_at Contig1519 - - 3e-2 At4g19100 unknown protein C.G. S.X.
0.04 4e-2 40 Oryza sativa Os.9845.1.S1_at - - - 0 C.G. S.X.
0.11 8e-6 52 Populus trichocarpa PtpAffx.117868.1.A1_at DN487503 hypothetical protein - 3e+0 At4g07786 unknown protein C.G. S.X.
0.03 1e+0 34 Triticum aestivum Ta.8133.2.S1_at BQ605758 - - 1e+0 At3g51160 MUR1 (MURUS 1) C.G. S.X.
0.03 2e+0 32 Zea mays ZmAffx.890.1.A1_at AI770846 - - 3e+0 At5g37240 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage