CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1607123_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.76 91.5 1607123_at CF204106.1 - - 2e-9 At1g11870 SRS (SERYL-TRNA SYNTHETASE) S.X. H.G.
0.82 93.9 1610065_at CF373155 hypothetical protein LOC100260744 - 3e-1 At4g09775 - S.X. H.G.
0.74 91.0 1612453_at CF209808 hypothetical protein LOC100248413 - 3e-46 At1g11870 SRS (SERYL-TRNA SYNTHETASE) S.X. H.G.
0.67 87.9 1616874_at CF415286 - - 2e-18 At5g58250 unknown protein S.X. H.G.
0.67 87.9 1614257_at CB339549 hypothetical protein LOC100250970 - 4e-1 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) S.X. H.G.
0.67 87.9 1609523_at CF415830 hypothetical protein LOC100250310 - 7e-2 At2g28020 - S.X. H.G.
0.67 87.9 1614765_at CD003886 hypothetical protein LOC100242287 - 1e-78 At3g59870 unknown protein S.X. H.G.
0.62 83.3 1612460_s_at CF207746 hypothetical protein LOC100245544 - 4e-20 At2g38270 CXIP2 (CAX-INTERACTING PROTEIN 2) S.X. H.G.
0.61 83.2 1608952_at CF414365 hypothetical protein LOC100254862 - 9e-33 At3g06730 thioredoxin family protein S.X. H.G.
0.59 80.6 1607285_s_at CD013720 hypothetical protein LOC100262997 - 3e-54 At5g52520 OVA6 (OVULE ABORTION 6) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.8 98.6 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
5.8 98.6 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
4.9 97.9 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
4.8 97.8 GSM147723 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 52
4.7 97.7 GSM147727 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 56
4.3 97.2 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
4.3 97.2 GSM147720 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 49
4.2 97.1 GSM147715 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 44
4.1 96.9 GSM147733 Vitis aestivalis 'Norton ' mock inoculateds at 4 h post inoculation 62
3.9 96.6 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 8e-123 438 1612453_at CF209808 hypothetical protein LOC100248413 - 3e-46 At1g11870 SRS (SERYL-TRNA SYNTHETASE) C.G. S.X.
0.01 5e-1 34 1622010_at CF207538 similar to RNA polymerase alpha subunit - 0 Atcg00740 - C.G. S.X.
0.03 5e-1 34 1618536_at CB348415 - - 1e+0 At5g22930 unknown protein C.G. S.X.
0.02 5e-1 34 1615984_at CF204004.1 - - 2e+0 At3g18590 plastocyanin-like domain-containing protein C.G. S.X.
0.01 5e-1 34 1614503_at CB972598 - - 0 Atcg00740 - C.G. S.X.
0.03 5e-1 34 1613593_at CB975406 hypothetical protein LOC100261399 - 9e-34 At5g27470 seryl-tRNA synthetase / serine--tRNA ligase C.G. S.X.
0.01 5e-1 34 1613588_at CA818655 - - 6e-175 Atcg00730 - C.G. S.X.
0.03 5e-1 34 1612583_at CB003299 - - 9e-5 Atcg00730 - C.G. S.X.
0.02 5e-1 34 1608855_x_at CF204004.1 - - 2e+0 At3g18590 plastocyanin-like domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-9 63 Arabidopsis thaliana At1g11870 837734 SRS (SERYL-TRNA SYNTHETASE) Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana. - - - C.G. S.X.
0.07 2e-22 107 Glycine max Gma.16691.1.S1_at CD418097 - - 5e-27 At1g11870 SRS (SERYL-TRNA SYNTHETASE) C.G. S.X.
0.08 8e-4 44 Hordeum vulgare Contig26034_at Contig26034 - - 2e-9 At1g11870 SRS (SERYL-TRNA SYNTHETASE) C.G. S.X.
0.04 3e-3 44 Oryza sativa Os11g0610900 AK100567.1 - Seryl-tRNA synthetase, class IIa family protein 7e-8 At1g11870 SRS (SERYL-TRNA SYNTHETASE) C.G. S.X.
0.09 7e-19 95 Populus trichocarpa PtpAffx.12902.1.A1_at CV235977 hypothetical protein - 1e-42 At1g11870 SRS (SERYL-TRNA SYNTHETASE) C.G. S.X.
0.03 6e+0 32 Triticum aestivum TaAffx.98797.2.S1_at CA610762 - - 3e+0 At4g27360 dynein light chain, putative C.G. S.X.
0.02 3e+0 32 Zea mays Zm.2092.1.A1_at BM072795 dnaJ protein - 1e+0 At5g01390 DNAJ heat shock protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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