Gene omics information

Query gene ID	1607044_at
Gene name	hypothetical protein LOC100246065
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	89.5	1607044_at	BM437855	hypothetical protein LOC100246065	-	1e-35	At3g12160	RABA4D (RAB GTPASE HOMOLOG A4D)	S.X.	H.G.	Please select
0.55	77.3	1610213_at	BQ798061	similar to somatic embryogenesis receptor-like kinase 3	-	8e-11	At4g33430	BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE)	S.X.	H.G.	Please select
0.40	57.7	1621974_at	CB971118	hypothetical protein LOC100262951	-	6e-1	At3g57750	protein kinase, putative	S.X.	H.G.	Please select
0.22	25.6	1621655_at	CA817336	hypothetical protein LOC100243738	-	3e-2	At5g51670	unknown protein	S.X.	H.G.	Please select
0.12	12.1	1616371_at	CA817327	-	-	6e-15	At1g03950	VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3)	S.X.	H.G.	Please select
0.05	6.0	1614079_at	CB921082	hypothetical protein LOC100251692	-	2e-15	At3g57090	BIGYIN	S.X.	H.G.	Please select
0.05	6.0	1619061_at	CD717524	hypothetical protein LOC100245943	-	5e-57	At3g26020	serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.7	99.0	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.7	97.7	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.5	97.5	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
4.3	97.2	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
3.7	96.2	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
3.6	96.0	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9	93.8	GSM147715	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	44
2.8	93.4	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
2.7	93.0	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1808	1619728_at	BM437855	-	-	1e-35	At3g12160	RABA4D (RAB GTPASE HOMOLOG A4D)	C.G.	S.X.	Please select
0.25	5e-29	127	1609466_at	CD797661	hypothetical protein LOC100262838	-	3e-61	At5g65270	AtRABA4a (Arabidopsis Rab GTPase homolog A4a)	C.G.	S.X.	Please select
0.08	1e-17	89	1621911_at	CF214080	hypothetical protein LOC100252396	-	3e-64	At3g15060	AtRABA1g (Arabidopsis Rab GTPase homolog A1g)	C.G.	S.X.	Please select
0.07	4e-14	77	1615972_at	CF215988	hypothetical protein LOC100249712	-	9e-33	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	C.G.	S.X.	Please select
0.07	9e-9	59	1618348_at	CF373264	hypothetical protein LOC100265921	-	1e-47	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	C.G.	S.X.	Please select
0.04	6e-4	44	1615231_at	CF607773	hypothetical protein LOC100254995	-	1e-19	At2g31680	AtRABA5d (Arabidopsis Rab GTPase homolog A5d)	C.G.	S.X.	Please select
0.03	6e-4	44	1608533_at	CF212662	hypothetical protein LOC100242285	-	2e-18	At1g73640	AtRABA6a (Arabidopsis Rab GTPase homolog A6a)	C.G.	S.X.	Please select
0.02	9e-3	40	1615173_at	CF518560	hypothetical protein LOC100260965	-	1e-112	At4g35860	ATGB2 (GTP-BINDING 2)	C.G.	S.X.	Please select
0.02	9e-3	40	1607281_at	CB976932	hypothetical protein LOC100247365	-	5e-115	At5g55190	RAN3 (RAN GTPASE 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	1e-35	151	Arabidopsis thaliana	At3g12160	820393	RABA4D (RAB GTPASE HOMOLOG A4D)	Encodes RABA4D, a member of the Arabidopsis RabA4 subfamily of Rab GTPase proteins. It is transported in exocytic vesicles to the apical tip of pollen tubes where it appears to promote tip growth. Proper localization of RabA4d depends on ROP1, RIC3, and RIC4 activity.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	2e-31	137	Glycine max	Gma.520.1.S1_at	CD395711	small GTP-binding protein	-	5e-50	At5g65270	AtRABA4a (Arabidopsis Rab GTPase homolog A4a)	C.G.	S.X.	Please select
0.23	1e-33	143	Hordeum vulgare	Contig11759_at	Contig11759	-	-	1e-5	At3g12160	RABA4D (RAB GTPASE HOMOLOG A4D)	C.G.	S.X.	Please select
0.25	8e-32	139	Oryza sativa	Os09g0281700	X59276.1	-	Ras-related protein RGP1 (GTP-binding regulatoryprotein RGP1)	1e-17	At5g47960	ATRABA4C	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.38	7e-47	188	Populus trichocarpa	PtpAffx.216780.1.S1_at	pmrna31776	hypothetical protein	-	6e-58	At3g12160	RABA4D (RAB GTPASE HOMOLOG A4D)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.31	2e-37	157	Triticum aestivum	Ta.12940.1.A1_at	CD491400	-	-	2e-8	At5g47960	ATRABA4C	C.G.	S.X.	Please select
0.19	9e-16	83	Zea mays	Zm.14385.1.S1_at	AW059976	hypothetical protein LOC100272235	-	1e-23	At5g65270	AtRABA4a (Arabidopsis Rab GTPase homolog A4a)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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