CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1607032_s_at

Gene name hypothetical protein LOC100250535

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1607032_s_at CB345316 hypothetical protein LOC100250535 - 2e-18 At1g01060 LHY (LATE ELONGATED HYPOCOTYL) S.X. H.G.
0.67 87.9 1614155_at CB346380 hypothetical protein LOC100258936 - 3e-1 At4g37235 unknown protein S.X. H.G.
0.61 83.2 1621466_at CF205958.1 - - 4e-1 At3g10820 DNA binding / protein binding / transcription regulator S.X. H.G.
0.50 72.7 1609874_at CF514134 hypothetical protein LOC100248114 - 4e-38 At3g02380 COL2 (constans-like 2) S.X. H.G.
0.40 57.7 1615045_at CF517394 hypothetical protein LOC100264272 - 5e-1 At1g78870 UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) S.X. H.G.
0.31 41.3 1616851_at CF202152.1 hypothetical protein LOC100265283 - 5e-15 At3g02580 STE1 (STEROL 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.3 98.2 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
5.0 98.0 GSM147725 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 54
4.9 97.9 GSM147731 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 60
4.4 97.3 GSM147719 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 48
4.3 97.2 GSM147724 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 53
4.1 96.9 GSM147742 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 71
3.9 96.6 GSM147737 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 66
3.8 96.4 GSM147713 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 42
3.7 96.2 GSM147708 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 37
3.6 96.0 GSM147730 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 59
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.48 0 1408 1621466_at CF205958.1 - - 4e-1 At3g10820 DNA binding / protein binding / transcription regulator C.G. S.X.
0.01 9e-2 38 1620254_at CD713450 - - 2e+0 At5g12990 CLE40 (CLAVATA3/ESR-RELATED 40) C.G. S.X.
0.01 9e-2 38 1616457_at CD713450 hypothetical protein LOC100263581 - 2e+0 At5g12990 CLE40 (CLAVATA3/ESR-RELATED 40) C.G. S.X.
0.01 4e-1 36 1614397_at CD004436 hypothetical protein LOC100257527 - 2e-12 At4g12280 copper amine oxidase family protein C.G. S.X.
0.01 1e+0 34 1622062_at CB340908 - - 3e+0 At1g64355 unknown protein C.G. S.X.
0.01 1e+0 34 1621700_at CB980402 hypothetical protein LOC100265931 - 3e-2 At2g39050 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.01 1e+0 34 1620181_at CA817405 hypothetical protein LOC100261394 - 2e-16 At5g06130 chaperone protein dnaJ-related C.G. S.X.
0.01 1e+0 34 1613688_at BQ798030 hypothetical protein LOC100248745 - 4e+0 At2g41230 unknown protein C.G. S.X.
0.01 1e+0 34 1613438_at CB835999 - - 5e-1 At5g55430 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 2e-18 95 Arabidopsis thaliana At1g01060 839341 LHY (LATE ELONGATED HYPOCOTYL) LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 - - - C.G. S.X.
0.25 8e-15 83 Glycine max Gma.2553.1.S1_at CD392860 MYB transcription factor MYB134 - 1e-15 At1g01060 LHY (LATE ELONGATED HYPOCOTYL) C.G. S.X.
0.05 3e-9 63 Hordeum vulgare Contig3873_at Contig3873 - - 3e-20 At1g01060 LHY (LATE ELONGATED HYPOCOTYL) C.G. S.X.
0.04 4e-11 71 Oryza sativa Os08g0157600 AY452478.1 - Myb, DNA-binding domain containing protein 5e-31 At1g01060 LHY (LATE ELONGATED HYPOCOTYL) C.G. S.X.
0.28 2e-21 105 Populus trichocarpa PtpAffx.125536.1.S1_at DN493884 hypothetical protein - 3e-3 At1g01060 LHY (LATE ELONGATED HYPOCOTYL) C.G. S.X.
0.01 3e-1 38 Triticum aestivum TaAffx.53659.1.S1_s_at CA690276 - - 6e-5 At4g01060 CPL3 (CAPRICE-LIKE MYB3) C.G. S.X.
0.02 4e-5 50 Zea mays Zm.7073.2.A1_at AI600777 - - 1e-2 At5g37260 RVE2 (REVEILLE 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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