Gene omics information

Query gene ID	1606964_at
Gene name	hypothetical protein LOC100241624
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.58	79.8	1606964_at	CF415058	hypothetical protein LOC100241624	-	2e-21	At5g64130	-	S.X.	H.G.	Please select
0.69	88.3	1617827_at	BQ792603	hypothetical protein LOC100253774	-	2e-8	At1g15120	ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative	S.X.	H.G.	Please select
0.64	84.7	1606896_at	CA815281	hypothetical protein LOC100251845	-	1e-6	At4g21105	cytochrome-c oxidase/ electron carrier	S.X.	H.G.	Please select
0.57	79.8	1620495_at	CA812269	hypothetical protein LOC100255760	-	5e-9	At1g67350	unknown protein	S.X.	H.G.	Please select
0.55	77.3	1608357_a_at	CA818365	hypothetical protein LOC100241670 /// hypothetical protein LOC100263948	-	5e-6	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	S.X.	H.G.	Please select
0.52	73.9	1611461_at	BQ792825	hypothetical protein LOC100246984	-	1e-37	At4g34700	complex 1 family protein / LVR family protein	S.X.	H.G.	Please select
0.48	68.8	1620417_at	CA817150	-	-	1e-19	At2g29530	mitochondrial import inner membrane translocase (TIM10)	S.X.	H.G.	Please select
0.48	68.8	1608557_at	CA808980	hypothetical protein LOC100261282	-	9e-20	At3g52730	ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein	S.X.	H.G.	Please select
0.44	64.1	1616477_at	CF212148	hypothetical protein LOC100247852	-	2e-11	At2g18840	integral membrane Yip1 family protein	S.X.	H.G.	Please select
0.39	54.9	1621726_at	CF211619	hypothetical protein LOC100259432	-	1e-40	At3g59810	small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.9	97.9	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.6	96.0	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2	94.9	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9	93.8	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.2	89.9	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.0	88.2	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	7e-55	212	1619748_at	CB002933	-	-	4e+0	At3g17950	unknown protein	C.G.	S.X.	Please select
0.19	7e-55	212	1607083_at	CB002933	-	-	4e+0	At3g17950	unknown protein	C.G.	S.X.	Please select
0.20	1e-13	75	1618566_at	CB976909	hypothetical protein LOC100262011	-	2e-18	At1g69510	-	C.G.	S.X.	Please select
0.02	4e-1	34	1618974_at	CF518903	hypothetical protein LOC100264692	-	9e-40	At5g11900	eukaryotic translation initiation factor SUI1 family protein	C.G.	S.X.	Please select
0.03	4e-1	34	1615908_at	CF214075	hypothetical protein LOC100249757	-	9e-88	At3g02530	chaperonin, putative	C.G.	S.X.	Please select
0.02	1e+0	32	1622841_at	CF511691	-	-	7e-37	At4g27120	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	1619032_at	CF511777	hypothetical LOC100255424	-	7e-37	At4g27120	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	1618091_s_at	CB973873	hypothetical protein LOC100255026	-	6e-3	At3g17020	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.03	1e+0	32	1615502_at	CD798756	-	-	6e-2	At4g17580	Bax inhibitor-1 family protein / BI-1 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	2e-21	103	Arabidopsis thaliana	At5g64130	836534	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.27	1e-47	190	Glycine max	Gma.2275.1.S1_at	CD390888	-	-	4e-22	At5g64130	-	C.G.	S.X.	Please select
0.12	8e-22	103	Hordeum vulgare	Contig5682_at	Contig5682	-	-	3e-17	At5g64130	-	C.G.	S.X.	Please select
0.09	1e-11	71	Oryza sativa	Os01g0249300	AK061748.1	-	Conserved hypothetical protein	2e-3	At5g64130	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.30	3e-45	182	Populus trichocarpa	PtpAffx.159357.1.A1_at	CV276256	-	-	7e-23	At5g64130	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.08	3e-1	36	Triticum aestivum	TaAffx.113142.1.S1_s_at	CA617694	-	-	1e+0	At3g12730	myb family transcription factor	C.G.	S.X.	Please select
0.10	9e-12	69	Zea mays	Zm.5374.1.A1_a_at	AY108494.1	negatively light-regulated protein	-	4e-20	At5g64130	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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