CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1606962_at

Gene name hypothetical protein LOC100244131

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 79.8 1606962_at CF405430 hypothetical protein LOC100244131 - 4e-13 At5g14240 - S.X. H.G.
0.91 98.8 1622560_at CF211302 hypothetical protein LOC100265315 - 3e-27 At3g52850 VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1) S.X. H.G.
0.80 93.6 1609981_at CF207945 hypothetical protein LOC100247386 - 2e-11 At5g20910 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.71 89.5 1612909_at CF404929 hypothetical protein LOC100264659 - 3e-8 At3g28970 AAR3 (antiauxin-resistant 3) S.X. H.G.
0.67 87.9 1609821_at CF212296 - - 5e-6 At3g60250 CKB3 S.X. H.G.
0.55 77.3 1607141_at CD712648 hypothetical protein LOC100254376 - 1e-77 At5g19990 RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.6 92.5 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.4 91.3 GSM287867 Green hard berry C1 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.3 90.7 GSM287883 Green soft berry A23 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.2 89.9 GSM287890 Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.2 89.9 GSM287888 Green soft berry C24 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM287877 Green hard berry B12 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM287895 Pink soft berry B13 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM287881 Green soft berry B10 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM287884 Green soft berry C7 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM287896 Pink soft berry C27 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-1 36 1621270_at CB971990 hypothetical protein LOC100252531 - 4e-4 At5g11590 TINY2 (TINY2) C.G. S.X.
0.02 1e-1 36 1611583_at CF405989 hypothetical protein LOC100250412 - 3e-5 At5g52020 AP2 domain-containing protein C.G. S.X.
0.03 1e-1 36 1608722_at BQ792556 hypothetical protein LOC100252840 - 1e-1 At5g40630 ubiquitin family protein C.G. S.X.
0.03 1e-1 36 1608560_at CF405443 hypothetical protein LOC100250989 - 3e+0 At3g09890 ankyrin repeat family protein C.G. S.X.
0.02 1e-1 36 1607700_at CB345471 hypothetical protein LOC100260289 - 2e-3 At4g02160 unknown protein C.G. S.X.
0.03 1e-1 36 1606773_at CF208569 hypothetical protein LOC100243052 - 1e-18 At3g54300 ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) C.G. S.X.
0.03 2e+0 32 1622127_at CK138186.1 hypothetical LOC100262546 - 9e-1 At3g50070 CYCD3 C.G. S.X.
0.02 2e+0 32 1621902_at CB345928 hypothetical protein LOC100255485 - 4e-26 At1g09350 AtGolS3 (Arabidopsis thaliana galactinol synthase 3) C.G. S.X.
0.02 2e+0 32 1620091_at CB834389 - - 3e-1 At4g26780 AR192 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 4e-13 75 Arabidopsis thaliana At5g14240 831274 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB - - - C.G. S.X.
0.14 6e-16 85 Glycine max GmaAffx.1301.108.A1_at CD414611 - - 3e-1 At1g68140 - C.G. S.X.
0.09 3e-3 42 Hordeum vulgare Contig8441_at Contig8441 - - 1e-1 At4g30097 unknown protein C.G. S.X.
0.10 2e-7 57 Oryza sativa Os01g0184800 AK073377.1 - Phosducin family protein 4e-5 At5g14240 - C.G. S.X.
0.25 2e-25 117 Populus trichocarpa Ptp.2022.1.S1_s_at CV258781 hypothetical protein - 9e-6 At5g14240 - C.G. S.X.
0.09 2e-3 44 Triticum aestivum TaAffx.70985.1.A1_at BG314283 - - 1e+0 At1g43720 unknown protein C.G. S.X.
0.21 2e-7 56 Zea mays Zm.10774.2.A1_at AI746208 hypothetical protein LOC100217149 - 4e-1 At5g14240 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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